View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_7 (Length: 430)
Name: NF0541_low_7
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 195 - 360
Target Start/End: Original strand, 16078060 - 16078225
Alignment:
| Q |
195 |
ggacattacatacaatcattctttaaattttattttccttcaaattcatcatcacactggtttacactgaagtatgcataaaaaatatactcattatttt |
294 |
Q |
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| T |
16078060 |
ggacattacatacaatcattctttaaattttattttccttcaaattcatcatcacactggtttacactgaagtatgcataaaaaatatactcattatttt |
16078159 |
T |
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| Q |
295 |
ccttctagtttttcttgattcataatgttttaagtcaagttttttgttgaatatttcatcattcat |
360 |
Q |
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| T |
16078160 |
ccttctagtttttcttgattcataatgttttaagtcaagttttttgttgaatatttcatcattcat |
16078225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 16077895 - 16077992
Alignment:
| Q |
30 |
atatcatcatatggtgaattatatttctcacctatttcttcattatctctttcattttgaataatcacaaaggttgagaaaaattgtgatagaaagca |
127 |
Q |
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| T |
16077895 |
atatcatcatatggtgaattatatttctcacatatttcttcattatctctttcattttgaataatcacaaaggttgagagaaattgtgatagaaagca |
16077992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 16070736 - 16070809
Alignment:
| Q |
199 |
attacatacaatcattctttaaattttattttccttcaaattcatcatcacactggtttacactgaagtatgca |
272 |
Q |
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| T |
16070736 |
attacatagaatcattctttaaattgtaatatccttcagattctctattacattggtttacaccgaagtatgca |
16070809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 5332384 - 5332335
Alignment:
| Q |
369 |
accaaaactttgacaacgatgtcaaggttatttatgtcttgcatcatatt |
418 |
Q |
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| T |
5332384 |
accaaaactttgacaacgatgtcaaggttatttatgtcttgcatcatatt |
5332335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 5350103 - 5350054
Alignment:
| Q |
369 |
accaaaactttgacaacgatgtcaaggttatttatgtcttgcatcatatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350103 |
accaaaactttgacaacgatgtcaaggttatttatgtcttgcatcatatt |
5350054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 3859826 - 3859908
Alignment:
| Q |
195 |
ggacattacatacaatcattctttaaattttatt-----ttccttcaaattcatcatcacactggtttacactgaagtatgca |
272 |
Q |
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|||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||| ||||||||||| |
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| T |
3859826 |
ggactttacatacaatcattctttaaattttaatttcaattccttcaaatttatcatcacattggtttacattgaagtatgca |
3859908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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