View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_9 (Length: 426)
Name: NF0541_low_9
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 29 - 417
Target Start/End: Original strand, 5049562 - 5049956
Alignment:
| Q |
29 |
aaaacaagctcataaactaagtaaaaaggattatgagttataatagtattacatcacaaagttatagtgaaaactattcaaaagtttaaatagaaataga |
128 |
Q |
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| T |
5049562 |
aaaacaagctcataaactaagtaaaaaggattatgagttataatagtattacatcacaaagttatagtgaaaactattcaaaagtttaaatagaaataga |
5049661 |
T |
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| Q |
129 |
tctgatgttgtggctcaactacataagcgtggttcctttcccttttgctagggtaggaagaaaaccatatatatctcaacaagatgtttgagtaacagat |
228 |
Q |
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| T |
5049662 |
tctgatgtcgtggctcaactacataagcgtggttcctctcccttttgctagggtaggaagaaaaccatatatatctcaacaagatgttggagtaacagat |
5049761 |
T |
|
| Q |
229 |
attcttttcttccatattcatatgataacgatataatttgaacttcatacatgatttcttagtttttcttggttatcatgtgtggattatgtttaaattt |
328 |
Q |
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| T |
5049762 |
attcctttcttccatattcatatgataacaatataatttgaacttcatacatgatttcttagtttttcttggttatcatgtgtggattatgtttaaattt |
5049861 |
T |
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| Q |
329 |
gtagtttacttgatctgaattattg------gattctgattgaccgaaaacataacgcagatatcaatcttaagaattaaccttcttttctctgc |
417 |
Q |
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| T |
5049862 |
gtagtttacttgatctgaattattggattctgattctgattgaccgaaaacataacacagatatcaatcctaagaattaaccttcttttctctgc |
5049956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 86 - 320
Target Start/End: Original strand, 32708675 - 32708904
Alignment:
| Q |
86 |
aaagttatagtgaaaactattcaaaagttta-aatagaaatagatctgatgttgtggctcaactacataagcgtggttcctttcccttttgctagggtag |
184 |
Q |
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| T |
32708675 |
aaagttacagtgaaaaatattcaaaacataagaatagaaataattctgatcttgtgccccaactacataagcatggttccttgccattttg-----gtag |
32708769 |
T |
|
| Q |
185 |
gaagaaaaccatatatatctcaacaagatgtttgagtaacagatattcttttcttccatattcatatgataacgatataatttgaacttcatacatgatt |
284 |
Q |
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|||| |||| ||||| || |||||| ||||| |||||||||| || | |||||||||||| ||||||||| |||||||| ||||||||||| ||| || |
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| T |
32708770 |
gaaggaaacgatataaatgccaacaa-atgttagagtaacagaaatccctttcttccatatctatatgataatgatataatatgaacttcataaatgttt |
32708868 |
T |
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| Q |
285 |
tcttagtttttcttggttatcatgtgtggattatgt |
320 |
Q |
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| T |
32708869 |
tcttaatttctcttggttgtcatgtgtggattatgt |
32708904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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