View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_15 (Length: 374)
Name: NF0542_high_15
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 39713114 - 39713475
Alignment:
| Q |
11 |
tgagaggaagagaagtaggatttgctgttcttgttgcaggaaacacaagagtttgctcaataagtttatgttctgctcctataggttttcccatttctta |
110 |
Q |
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| T |
39713114 |
tgagaggaagataagtagttgttgctgttcttgttgcaggaaacacaagagtttgctcaataagtttatgctctgctcctataggttttcccatttctta |
39713213 |
T |
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| Q |
111 |
aatttgaaatggatgggatgatatgaaatgctattgggaagaagcaatttatacacctttaagagatgtaatatcacgtataaaatatggaaaatactat |
210 |
Q |
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| T |
39713214 |
aatttgatatggatgggatgatatgaaatgctattgggaagaagcaatttatacacctttaagagatgtaatatcacgtataaaatatggaaaatattat |
39713313 |
T |
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| Q |
211 |
ggtacgataannnnnnnnnnnnnnnaataattgtac-acactaatccgcttgagttggttcggtggtgttgactttagaccttatgtttgttttaagatg |
309 |
Q |
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||||||| || ||||||||||| | |||||||| |||||||| ||||||| ||||| ||| |||| |||||||||||||||||| |
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| T |
39713314 |
ggtacgacaa---ttttttttttaaaataattgtacgatactaatccatttgagttgattcggtgatgttggcttgagactttatgtttgttttaagata |
39713410 |
T |
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| Q |
310 |
ttaagtttgattctttcgatgttaatttgaattcttcgaaaaataataatagtacgatactacca |
374 |
Q |
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| T |
39713411 |
ttaagttcaattctttcgatgtcaatttgaattcttcaaaaaataataattgtacgatactacca |
39713475 |
T |
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