View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_17 (Length: 372)
Name: NF0542_high_17
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 97 - 364
Target Start/End: Complemental strand, 28499451 - 28499184
Alignment:
| Q |
97 |
aataatttctatttaagagaatggcaattcataacaaatgttcttttatacacgtatgaatatgaattctctgcctccatgagaccctgcaattgtagtc |
196 |
Q |
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| T |
28499451 |
aataatttctatttaagagaatggcaattcatcacaaatgttcttttatacacgtatgaatatgaattttctgcctccatgagaccctgcaactgt-gtc |
28499353 |
T |
|
| Q |
197 |
atgaatat-aatcattaggtaacgagcccaaattgatttcagacaagtagaatttattttgatagagctagatattctccaatagaattaattttgcata |
295 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28499352 |
atgaatattaatcattaggtaacgagtccaaattgatttcagacaagtagaatttattttgatagagctagatattctccaatagaattaattttgcata |
28499253 |
T |
|
| Q |
296 |
tagaattagtgtatatacttatattcaaattcaatttgacaaaataacagtgacaccacgatattgttg |
364 |
Q |
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|
||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||| |
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| T |
28499252 |
tagaattagtgtatatacttatattcaaattcaatttaataaaataagagtgacaccacgattttgttg |
28499184 |
T |
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