View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_19 (Length: 324)
Name: NF0542_high_19
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 38077836 - 38078079
Alignment:
| Q |
30 |
atatccagtctagaacaaatttaattttgtactatcgtgaaagtaatcatctcccagacacagcataaactgaactactctgcttgaaacaaataatcca |
129 |
Q |
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| T |
38077836 |
atatccagtctagaacaaatttaattttgtactatcgtgaaagtaatcatctcccagacacagcataaactgaactactctgcttgaaacaaataatcca |
38077935 |
T |
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| Q |
130 |
acacacctagtgtatgtactatgtatatttgtcgtgtttgtgcaaatatctttgacgacttttacacagtcatacacacatgtatatgcccgtttattta |
229 |
Q |
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| T |
38077936 |
acacacctagtg-------tatgtatatttgtcgtgtttgtgcaaatatctttgacgacttttacacagtcatacacacatgtatatgtccgtttattta |
38078028 |
T |
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| Q |
230 |
tatccttgaattaa---------agtcagaatattacacgcaactaatgat |
271 |
Q |
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| T |
38078029 |
tatccttgaattaatgaatatagagtcagaatattacacgcaactaatgat |
38078079 |
T |
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