View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_high_2 (Length: 641)

Name: NF0542_high_2
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_high_2
NF0542_high_2
[»] chr7 (23 HSPs)
chr7 (323-579)||(41030781-41031036)
chr7 (149-274)||(41030522-41030647)
chr7 (29-119)||(41030184-41030274)
chr7 (272-317)||(41030701-41030746)
chr7 (125-192)||(42187471-42187537)
chr7 (126-197)||(36101975-36102045)
chr7 (125-195)||(43281675-43281744)
chr7 (125-195)||(45836692-45836761)
chr7 (125-190)||(36514424-36514488)
chr7 (125-194)||(40169650-40169718)
chr7 (125-194)||(47848675-47848743)
chr7 (125-197)||(26742106-26742177)
chr7 (144-195)||(38135424-38135475)
chr7 (145-195)||(24549905-24549955)
chr7 (129-195)||(29650389-29650454)
chr7 (122-196)||(30200174-30200247)
chr7 (125-195)||(38607005-38607074)
chr7 (127-196)||(28628144-28628212)
chr7 (153-194)||(35713723-35713764)
chr7 (125-190)||(38920795-38920859)
chr7 (127-195)||(12966025-12966092)
chr7 (125-193)||(27021906-27021973)
chr7 (125-197)||(36136765-36136836)
[»] chr2 (20 HSPs)
chr2 (331-533)||(42607216-42607422)
chr2 (29-77)||(42606646-42606694)
chr2 (145-196)||(9578914-9578965)
chr2 (125-195)||(12734700-12734769)
chr2 (125-189)||(6218968-6219031)
chr2 (125-197)||(43752157-43752228)
chr2 (125-197)||(3481145-3481213)
chr2 (125-196)||(25834682-25834752)
chr2 (125-195)||(3243865-3243934)
chr2 (129-195)||(38429889-38429954)
chr2 (125-194)||(38434952-38435021)
chr2 (125-195)||(43238305-43238374)
chr2 (125-177)||(18958908-18958959)
chr2 (125-196)||(12141545-12141615)
chr2 (125-196)||(41763253-41763323)
chr2 (125-195)||(45367837-45367906)
chr2 (124-193)||(41197442-41197510)
chr2 (525-558)||(42607591-42607624)
chr2 (165-193)||(9578713-9578741)
chr2 (132-196)||(9647820-9647883)
[»] chr1 (18 HSPs)
chr1 (125-197)||(2544600-2544671)
chr1 (125-196)||(32404737-32404807)
chr1 (125-194)||(48431619-48431687)
chr1 (125-195)||(15085935-15086004)
chr1 (127-197)||(35828760-35828829)
chr1 (125-195)||(38807883-38807952)
chr1 (125-194)||(43423720-43423788)
chr1 (125-197)||(1661431-1661502)
chr1 (129-196)||(13827928-13827994)
chr1 (125-195)||(696270-696339)
chr1 (125-195)||(4001667-4001736)
chr1 (125-195)||(9509319-9509388)
chr1 (127-197)||(36340013-36340082)
chr1 (125-191)||(37263332-37263397)
chr1 (164-196)||(16822233-16822265)
chr1 (126-194)||(27637846-27637913)
chr1 (125-177)||(37463103-37463154)
chr1 (155-191)||(44905548-44905584)
[»] chr4 (21 HSPs)
chr4 (125-191)||(55768717-55768782)
chr4 (125-191)||(55832973-55833038)
chr4 (126-193)||(31459032-31459098)
chr4 (144-197)||(47611746-47611799)
chr4 (125-194)||(54470208-54470276)
chr4 (122-194)||(42639233-42639304)
chr4 (125-196)||(35555858-35555928)
chr4 (125-194)||(28236184-28236252)
chr4 (126-181)||(3254134-3254187)
chr4 (126-193)||(37797854-37797920)
chr4 (125-196)||(41192837-41192907)
chr4 (125-195)||(33191060-33191129)
chr4 (134-196)||(42285911-42285972)
chr4 (131-185)||(49987435-49987488)
chr4 (125-194)||(1793461-1793529)
chr4 (125-194)||(28497491-28497558)
chr4 (128-197)||(29398822-29398890)
chr4 (129-194)||(38570960-38571024)
chr4 (125-194)||(51252674-51252742)
chr4 (125-196)||(31403229-31403297)
chr4 (125-193)||(39100749-39100816)
[»] chr3 (22 HSPs)
chr3 (128-197)||(42510226-42510292)
chr3 (125-197)||(50960843-50960914)
chr3 (126-195)||(49503766-49503834)
chr3 (125-196)||(54128379-54128449)
chr3 (125-195)||(25191378-25191447)
chr3 (126-184)||(26490317-26490374)
chr3 (125-195)||(36820173-36820242)
chr3 (126-195)||(47233808-47233876)
chr3 (125-181)||(44134056-44134111)
chr3 (127-182)||(22902807-22902862)
chr3 (125-196)||(38060432-38060502)
chr3 (125-196)||(39600892-39600962)
chr3 (125-196)||(52138801-52138871)
chr3 (144-194)||(21200567-21200617)
chr3 (125-191)||(28245438-28245503)
chr3 (153-183)||(29919332-29919362)
chr3 (153-183)||(29968485-29968515)
chr3 (125-195)||(35033147-35033216)
chr3 (125-194)||(3987048-3987116)
chr3 (125-194)||(27917571-27917639)
chr3 (155-196)||(39235168-39235209)
chr3 (125-193)||(41842725-41842792)
[»] scaffold0018 (1 HSPs)
scaffold0018 (125-196)||(44079-44149)
[»] chr5 (20 HSPs)
chr5 (125-196)||(33667217-33667287)
chr5 (122-176)||(27891-27944)
chr5 (125-195)||(31636132-31636201)
chr5 (125-197)||(79514-79585)
chr5 (125-177)||(14667764-14667815)
chr5 (125-196)||(28676596-28676666)
chr5 (125-195)||(14665715-14665784)
chr5 (125-195)||(16347590-16347659)
chr5 (125-195)||(38684968-38685037)
chr5 (125-194)||(6888994-6889062)
chr5 (127-196)||(14749310-14749378)
chr5 (124-195)||(3301844-3301914)
chr5 (125-183)||(15168793-15168850)
chr5 (144-194)||(42199305-42199355)
chr5 (143-196)||(4026546-4026599)
chr5 (125-194)||(6859382-6859450)
chr5 (124-193)||(26884902-26884971)
chr5 (155-195)||(1525674-1525714)
chr5 (160-196)||(2712979-2713015)
chr5 (125-177)||(38341647-38341698)
[»] chr8 (13 HSPs)
chr8 (125-193)||(45512709-45512776)
chr8 (125-196)||(45419238-45419308)
chr8 (125-192)||(9695632-9695698)
chr8 (126-197)||(36143367-36143437)
chr8 (125-196)||(39946858-39946928)
chr8 (125-184)||(41444549-41444607)
chr8 (156-194)||(9905094-9905132)
chr8 (129-191)||(13171865-13171926)
chr8 (131-197)||(29645044-29645109)
chr8 (164-197)||(43904875-43904908)
chr8 (125-196)||(34196073-34196141)
chr8 (122-194)||(41971991-41972061)
chr8 (155-195)||(42854216-42854256)
[»] chr6 (7 HSPs)
chr6 (124-196)||(608157-608228)
chr6 (125-195)||(5258360-5258429)
chr6 (155-196)||(24665840-24665881)
chr6 (126-197)||(14389378-14389447)
chr6 (125-196)||(33084059-33084129)
chr6 (125-175)||(31818533-31818582)
chr6 (125-194)||(9593919-9593987)
[»] scaffold0045 (1 HSPs)
scaffold0045 (155-195)||(86821-86861)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 323 - 579
Target Start/End: Original strand, 41030781 - 41031036
Alignment:
Q  323 cttttaggtttgtttatgaagaaatcagaaaatttattatgtgtctcaggatccttctaccaaagggaccacatcaaatgcagatacatctaaaaagaga 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41030781 cttttaggtttgtttatgaagaaatcagaaaatttattatgtgtctcaggatccttctaccaaagggaccacatcaaatgcagatacatctaaaaagaga 41030880  T
Q  423 gctctacgagtgcttgaacaagatgacgtggtaagtttcataccatttgaatttataacatgtttatcaggaaagcagaggtccatgattatgcatctgc 522  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  41030881 gctctacgagtgcttgaacaagatgatgtggtaagtttcataccatttgaatttataacatgcttatcaggaaagcaga-gtccatgattatgcatctgc 41030979  T
Q  523 aattatcaatttgtcatcattttcatattgagaaaaagtatacacacacattttcag 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41030980 aattatcaatttgtcatcattttcatattgagaaaaagtatacacacacattttcag 41031036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 41030522 - 41030647
Alignment:
Q  149 ataatggaaaatagacttaggtggtttggacatgtaaagagaagacctaatttacaatatcaatagctagtttcagttccttcttaattacaaatttaca 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41030522 ataatggaaaatagacttaggtggtttggacatgtaaagagaagacctaatttacaatatcaatagcttgtttcagttccttcttaattacaaatttaca 41030621  T
Q  249 attgtgtaacacctattttgtggtta 274  Q
    ||||||||||||||||||||||||||    
T  41030622 attgtgtaacacctattttgtggtta 41030647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 41030184 - 41030274
Alignment:
Q  29 aaagaggatatgtttggcacacttgttccttgtcctttccaggtaaataccacaccattttcctttctttttcatgaattatcttatcaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41030184 aaagaggatatgtttggcacacttgttccttgtcctttccaggtaaataccacaccattttcctttctttttcatgaattatcttatcaaa 41030274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 41030701 - 41030746
Alignment:
Q  272 ttaaagattgcattttatattatagctgtcacatttctgttccatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41030701 ttaaagattgcattttatattatagctgtcacatttctgttccatt 41030746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 42187471 - 42187537
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaag 192  Q
    |||||||||||||| ||||||| |||  |||||||||| |||||||||||||| ||||||||||||||    
T  42187471 gggtagcacctataatagaaaa-gatggtggaaaataggcttaggtggtttgggcatgtaaagagaag 42187537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 36102045 - 36101975
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||||||||| ||||||| |||  |||||||||| ||||||||||||||  ||||| ||||||||||||    
T  36102045 ggtagcacctataatagaaaa-gatgttggaaaataggcttaggtggtttggggatgtagagagaagaccta 36101975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 43281675 - 43281744
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  43281675 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 43281744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 45836761 - 45836692
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  45836761 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 45836692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 36514488 - 36514424
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagaga 190  Q
    |||||||||||||||||||||| |||  | |||| |||||||||||||||||| |||||| |||||    
T  36514488 gggtagcacctatagtagaaaa-gatggtagaaactagacttaggtggtttgggcatgtagagaga 36514424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 40169650 - 40169718
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||| |||||||||||| |||  |||||||||| |||||||||||||| |||||| ||| |||||    
T  40169650 gggtagcacttatagtagaaaa-gatggtggaaaataggcttaggtggtttgggcatgtagagataagac 40169718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 47848675 - 47848743
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||| |||||||||||||| |||  |||||||||| |||||||||||||| |||||  |||||||||    
T  47848675 gggtagcgcctatagtagaaaa-gatggtggaaaataggcttaggtggtttgggcatgtcgagagaagac 47848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 26742177 - 26742106
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||||||| |||  ||||||||||  |||||||||||| ||||||| ||| | ||||||    
T  26742177 gggtagcacctatagtagaaaa-gatggtggaaaataggattaggtggtttgaacatgtagagaaacgaccta 26742106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 38135475 - 38135424
Alignment:
Q  144 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||  |||||||||| ||||||||||||||||||||| | ||||||||    
T  38135475 aaaagatggtggaaaataggcttaggtggtttggacatgtagacagaagacc 38135424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 24549955 - 24549905
Alignment:
Q  145 aaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||| ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  24549955 aaagatgatggaaactaggcttaggtggtttgggcatgtagagagaagacc 24549905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 29650389 - 29650454
Alignment:
Q  129 agcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||  |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  29650389 agcacctatagtagaaaaat-tggtagaaaataggcttagatggtttggacatgtagagagaagacc 29650454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 30200247 - 30200174
Alignment:
Q  122 ttagggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||| |||||||||||| |||||||  |||||| ||| |||||||| ||| | |||||||| |||||||||    
T  30200247 ttagggtaacacctatagtag-aaaagatggtggaaactaggcttaggtgattttggcatgtaaatagaagacct 30200174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 38607005 - 38607074
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||  | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  38607005 gggtagcacctatagtagaaag-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 38607074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 28628212 - 28628144
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||| ||||||||  |||  |||||||| | |||||||||||||| ||||||||||||| ||||    
T  28628212 gtagcacctagagtagaaat-gatggtggaaaattggcttaggtggtttgggcatgtaaagagaaaacct 28628144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 35713723 - 35713764
Alignment:
Q  153 tggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  35713723 tggaaaataggcttaggtggtttgggcatgtagagagaagac 35713764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 38920795 - 38920859
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagaga 190  Q
    |||||||||||||||||| |||||||  |||||| ||| |||| ||||||||| |||||| |||||    
T  38920795 gggtagcacctatagtag-aaaagatggtggaaactaggcttaagtggtttgggcatgtagagaga 38920859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 12966025 - 12966092
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    ||||||||||||| |||||| |||  |||||| ||  |||||||||||||| |||||| ||||||||||    
T  12966025 gtagcacctatagaagaaaa-gatggtggaaactatgcttaggtggtttgggcatgtagagagaagacc 12966092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 27021973 - 27021906
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    |||||||||||||||||||||| | |  || ||| ||| |||||||||||||| |||||| ||||||||    
T  27021973 gggtagcacctatagtagaaaa-gttggtgaaaactaggcttaggtggtttgggcatgtagagagaaga 27021906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 36136765 - 36136836
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||| |||||| ||| || |||||| |||||    
T  36136765 gggtagcacctatagtag-aaaagatggtagaaaatagtcttaggttgtttgggcatatagagagaataccta 36136836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 331 - 533
Target Start/End: Original strand, 42607216 - 42607422
Alignment:
Q  331 tttgtttatgaagaaa-tcagaaaatttattatgtgtctcaggatccttct---accaaagggaccacatcaaatgcagatacatctaaaaagagagctc 426  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  42607216 tttgtttatgaagaaaatcagaagatttattatgtgtctcaggatccttcttctacccaagggaccacatcaaatgcagattcatctaaaaagagagctc 42607315  T
Q  427 tacgagtgcttgaacaagatgacgtggtaagtttcataccatttgaatttataacatgtttatcaggaaagcagaggtccatgattatgcatctgcaatt 526  Q
    ||  ||||||||||||| || | ||||| ||||   ||| |||||| ||||||||||| |||  ||||| ||| || |||| ||||||| |||||||||     
T  42607316 tagaagtgcttgaacaaaataatgtggtgagttcagtacaatttgattttataacatgcttacaaggaaggcacagatccaagattatgtatctgcaatc 42607415  T
Q  527 atcaatt 533  Q
    |||||||    
T  42607416 atcaatt 42607422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 42606646 - 42606694
Alignment:
Q  29 aaagaggatatgtttggcacacttgttccttgtcctttccaggtaaata 77  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  42606646 aaagaggatttgtttggcacgcttgttccttgtcctttccaggtaaata 42606694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 9578965 - 9578914
Alignment:
Q  145 aaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  9578965 aaagatgatgtaaaatagacttaggtggtttggacatgtagagagaagacct 9578914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 12734700 - 12734769
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||||  |  | |||||||| ||||| ||||||||||||||||||||||||||    
T  12734700 gggtagcacctatagtagaaaaat-tggtagaaaataggcttagatggtttggacatgtaaagagaagacc 12734769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 6218968 - 6219031
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagag 189  Q
    ||||||||| |||||||||||| |||| |||| ||||| ||||||||||||||||||||| ||||    
T  6218968 gggtagcacttatagtagaaaa-gatagtggataataggcttaggtggtttggacatgtagagag 6219031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 43752228 - 43752157
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||||||| | |  | |||||||| |||||||| |||||||||||| ||||||||||||    
T  43752228 gggtagcacctatagtagaaaagg-tggtagaaaataggcttaggtgatttggacatgtagagagaagaccta 43752157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 3481145 - 3481213
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||    |||||  ||||||| || ||||||||||||||||||||| ||||||||||||    
T  3481145 gggtagcacctatagta----aagatggtggaaaacaggcttaggtggtttggacatgtagagagaagaccta 3481213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 25834682 - 25834752
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| |||||||||||    
T  25834682 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacct 25834752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 3243934 - 3243865
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    ||||||||||||||||| |||||| | ||||||||||| ||||| ||||||||  ||||| ||||||||||    
T  3243934 gggtagcacctatagta-aaaaagttgatggaaaataggcttagatggtttgggaatgtagagagaagacc 3243865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 38429889 - 38429954
Alignment:
Q  129 agcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||||||||||||||    
T  38429889 agcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtaaagagaagacc 38429954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 38434952 - 38435021
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttagg-tggtttggacatgtaaagagaagac 194  Q
    |||||||||||||||||||||| |||  |||||| ||||||| || |||||||| ||||||||||||||||    
T  38434952 gggtagcacctatagtagaaaa-gatggtggaaactagactttgggtggtttgggcatgtaaagagaagac 38435021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 43238374 - 43238305
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| |||||||| |||||||||||||||||    
T  43238374 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttgggcatgtaaagagaagacc 43238305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 18958908 - 18958959
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttgg 177  Q
    |||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  18958908 gggtagcacctatagtag-aaaagatggtggaaaataggcttaggtggtttgg 18958959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 12141545 - 12141615
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||| |||||||  ||||||| || |||||||||||||| || ||| | |||||||||    
T  12141545 gggtagcacctatagtag-aaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacct 12141615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 41763323 - 41763253
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||| |||||||||||||||| | |  | |||||||| ||||||||||||||||||| | |||||||||||    
T  41763323 gggtaacacctatagtagaaaa-gttggtagaaaataggcttaggtggtttggacatgcagagagaagacct 41763253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 45367906 - 45367837
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||  ||||| ||||||||||||||| ||||||||||    
T  45367906 gggtagcacctatagtagaaaa-gttggtagaaaataaccttagatggtttggacatgtagagagaagacc 45367837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 41197510 - 41197442
Alignment:
Q  124 agggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    ||||||||||||||| ||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||    
T  41197510 agggtagcacctataatagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaaga 41197442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 558
Target Start/End: Original strand, 42607591 - 42607624
Alignment:
Q  525 ttatcaatttgtcatcattttcatattgagaaaa 558  Q
    ||||||||||||||||||| ||||||||||||||    
T  42607591 ttatcaatttgtcatcattctcatattgagaaaa 42607624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 9578741 - 9578713
Alignment:
Q  165 ttaggtggtttggacatgtaaagagaaga 193  Q
    |||||||||||||||||||||||||||||    
T  9578741 ttaggtggtttggacatgtaaagagaaga 9578713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 9647883 - 9647820
Alignment:
Q  132 acctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||||  |||  |||||| |||  |||||||||||||||||||||| |||||||||    
T  9647883 acctatagtagaaat-gatggtggaaactagctttaggtggtttggacatgtaaaaagaagacct 9647820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 2544600 - 2544671
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||||||| |||  ||||||| |||||||||||||||||||||||| ||||||||||||    
T  2544600 gggtagcacctatagtagaaaa-gatggtggaaaacagacttaggtggtttggacatgtagagagaagaccta 2544671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 32404807 - 32404737
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||| ||||||||||| ||||||||  |||||||||| ||||||||||||||| ||||| |||||||||||    
T  32404807 gggtaacacctatagta-aaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacct 32404737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 48431687 - 48431619
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||| |||||||||||||| |||  |||||||||| |||||||||||||| |||||| |||||||||    
T  48431687 gggtagcccctatagtagaaaa-gatggtggaaaataggcttaggtggtttgggcatgtagagagaagac 48431619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 15085935 - 15086004
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  15085935 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 15086004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 35828829 - 35828760
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||||||| |||||||| |||  ||||||||||  ||||||||||||||| |||| ||||||||||||    
T  35828829 gtagcacctatggtagaaaa-gatggtggaaaatagggttaggtggtttggacgtgtagagagaagaccta 35828760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 38807952 - 38807883
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||||||||| |||||| | |||||||||||||||||    
T  38807952 gggtagcacctatagtagaaaa-gttggtagaaaatagacttagatggtttaggcatgtaaagagaagacc 38807883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 43423720 - 43423788
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||| |||||||||||||||| |||  |||||| ||| |||||||||||||| |||||| |||||||||    
T  43423720 gggtaacacctatagtagaaaa-gatggtggaaactaggcttaggtggtttggccatgtagagagaagac 43423788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 1661431 - 1661502
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||| |||||||  |||||||||| || || |||||||  |||||| ||||||||||||    
T  1661431 gggtagcacctatagtag-aaaagatggtggaaaataggctcagatggtttgagcatgtagagagaagaccta 1661502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 13827994 - 13827928
Alignment:
Q  129 agcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||| |||  |||||| |||  |||||||||||| ||||||| |||||||||||    
T  13827994 agcacctatagtagaaaa-gatggtggaaactagggttaggtggtttgaacatgtagagagaagacct 13827928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 696270 - 696339
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||| ||||||||||| ||||||||||    
T  696270 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggcttggacatgtagagagaagacc 696339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 4001736 - 4001667
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| |||| |||||    
T  4001736 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagaggagacc 4001667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 9509319 - 9509388
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||| |||||||  |  ||||||| ||||||| |||||| |||||| ||||||||||    
T  9509319 gggtagcacctatagtag-aaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaagacc 9509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 36340082 - 36340013
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||| ||||||| |||  ||||||||||  ||||||||||| |||||| | ||||||||||||    
T  36340082 gtagcacctatattagaaaa-gatggtggaaaataggtttaggtggtttagacatggagagagaagaccta 36340013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 37263332 - 37263397
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||||||||||||| |||||||| | |||| |||||||  ||||||||| |||||| ||||||    
T  37263332 gggtagcacctatagtag-aaaagatagtagaaactagacttcagtggtttgggcatgtagagagaa 37263397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 16822265 - 16822233
Alignment:
Q  164 cttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||||||||||| |||||||||||    
T  16822265 cttaggtggtttggacatgtagagagaagacct 16822233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 27637913 - 27637846
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||||||| |||||| ||| || |||| |||||||||||| ||||| |||||| ||| |||||    
T  27637913 ggtagcacctatagcagaaaa-gatgatagaaactagacttaggtgttttgggcatgtagagaaaagac 27637846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 37463154 - 37463103
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttgg 177  Q
    |||||||||||||||||| |||||| | | |||||||| ||||||||||||||    
T  37463154 gggtagcacctatagtag-aaaagacagtagaaaataggcttaggtggtttgg 37463103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 44905584 - 44905548
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44905584 gaaaatatgcttaggtggtttggacatgtaaagagaa 44905548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 55768782 - 55768717
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||| |||||||||||||||    
T  55768782 gggtagcacctatagtagaaaa-gatcatggaaaataggtttaggtggtttagacatgtaaagagaa 55768717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 55833038 - 55832973
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||| |||||||||||||||    
T  55833038 gggtagcacctatagtagaaaa-gatcatggaaaataggtttaggtggtttagacatgtaaagagaa 55832973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 31459032 - 31459098
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    ||||||||||||||||||||| |||  | |||||||| |||||||||||||| |||||||||||||||    
T  31459032 ggtagcacctatagtagaaaa-gatggtagaaaataggcttaggtggtttgggcatgtaaagagaaga 31459098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 47611746 - 47611799
Alignment:
Q  144 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||    
T  47611746 aaaagatgatggaaaataggcttaggtggtttgggcatgtagagagaagaccta 47611799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 54470208 - 54470276
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||||||||||| |||||||  |||||| |||||||| ||||||||| |||||| |||||||||    
T  54470208 gggtagcacctatagtag-aaaagatggtggaaactagacttaagtggtttgggcatgtagagagaagac 54470276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 42639304 - 42639233
Alignment:
Q  122 ttagggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||| ||||||||||||||||| |||  ||||||  || ||||||||||||||||||||| |||||||||    
T  42639304 ttagggttgcacctatagtagaaaa-gatggtggaaaccaggcttaggtggtttggacatgtagagagaagac 42639233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 35555928 - 35555858
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| |||  | |||| |||||||||||||||||| ||| || |||||||||||    
T  35555928 gggtagcacctatagtagaaaa-gatggtagaaactagacttaggtggtttgggcatttagagagaagacct 35555858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 28236184 - 28236252
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||||||||||| ||||| |  |||||||||| ||||| |||||||| |||||| |||||||||    
T  28236184 gggtagcacctatagtag-aaaagttggtggaaaataggcttagatggtttgggcatgtagagagaagac 28236252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 3254134 - 3254187
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacat 181  Q
    |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||    
T  3254134 ggtagcacctttagtagaaaa-gatgatggaaaatag-cttaggtggtttggacat 3254187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 37797854 - 37797920
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    ||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||    
T  37797854 ggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaaga 37797920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 41192837 - 41192907
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||| ||||||||| |||  |||||| |||||||||||| ||||  |||||| |||||||||||    
T  41192837 gggtagcacctacagtagaaaa-gatggtggaaactagacttaggtgatttgtgcatgtagagagaagacct 41192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 33191129 - 33191060
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||||||||| | |||||| |||||| ||||||||||    
T  33191129 gggtagcacctatagtagaaaa-gttggtagaaaatagacttagattgtttgggcatgtagagagaagacc 33191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 42285972 - 42285911
Alignment:
Q  134 ctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||| |||  | |||| |||||||||||||||||| |||||| |||||||||||    
T  42285972 ctatagtagaaaa-gatggtagaaactagacttaggtggtttgggcatgtatagagaagacct 42285911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 49987435 - 49987488
Alignment:
Q  131 cacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaa 185  Q
    |||||||||||||||| |||  |||||||||| |||||||||||||| |||||||    
T  49987435 cacctatagtagaaaa-gatggtggaaaataggcttaggtggtttggtcatgtaa 49987488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 1793461 - 1793529
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||||||||||| |||||| |  | |||||||  ||||| ||||||||||||||| |||||||||    
T  1793461 gggtagcacctatagta-aaaaagttggtagaaaataagcttagatggtttggacatgtagagagaagac 1793529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 28497491 - 28497558
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||||| |||||||||| |||  ||||||| || |||||||||||||| |||||| |||||||||    
T  28497491 gggtagcacctttagtagaaaa-gattgtggaaaa-aggcttaggtggtttgggcatgtagagagaagac 28497558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 29398822 - 29398890
Alignment:
Q  128 tagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||| |||||||| |||  |||||||||  |||| ||||||||| |||||| ||||||||||||    
T  29398822 tagcacctatggtagaaaa-gatggtggaaaatatgcttatgtggtttgggcatgtagagagaagaccta 29398890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 38571024 - 38570960
Alignment:
Q  129 agcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||||||| |||| |||| |||||| ||| |||||||||||||| |||||| | |||||||    
T  38571024 agcacctatagtacaaaa-gatagtggaaactaggcttaggtggtttgggcatgtagaaagaagac 38570960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 51252742 - 51252674
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||||| |||||| |||||||  |||||| ||| |||||||||| ||| |||||| |||||||||    
T  51252742 gggtagcacctctagtag-aaaagatggtggaaactaggcttaggtggtatgggcatgtagagagaagac 51252674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 31403297 - 31403229
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||||||||||||  ||  |||||| ||| ||||||||| |||| ||||||||||||| ||||    
T  31403297 gggtagcacctatagtagaaaa--atggtggaaactaggcttaggtgg-ttgggcatgtaaagagaacacct 31403229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 39100816 - 39100749
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    ||||||||||||||| || ||||| | || |||||||| ||||| ||||||| ||||||| ||||||||    
T  39100816 gggtagcacctatagaag-aaaagttgatagaaaataggcttagatggtttgaacatgtagagagaaga 39100749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 42510292 - 42510226
Alignment:
Q  128 tagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  ||||||||||||    
T  42510292 tagcacctatagtagaaaa-gatagtggaaaataggcttaggtggtttggacatgt--agagaagaccta 42510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 50960914 - 50960843
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||||||||||| |||  | |||||||| |||||||||||||| |||||| ||||||||||||    
T  50960914 gggtagcacctatagtagaaaa-gatggtagaaaataggcttaggtggtttgggcatgtagagagaagaccta 50960843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 49503834 - 49503766
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    ||||||||||||||||||||| |||  | |||||||| |||||||||||||| |||||| ||||||||||    
T  49503834 ggtagcacctatagtagaaaa-gatggtagaaaataggcttaggtggtttgggcatgtagagagaagacc 49503766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 54128379 - 54128449
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| |||  | |||||||| |||||||||||||| |||||| ||| |||||||    
T  54128379 gggtagcacctatagtagaaaa-gatggtagaaaataggcttaggtggtttgggcatgtagagaaaagacct 54128449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 25191378 - 25191447
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||||    | | ||||||||||||| ||||||||||||||| ||||||||||    
T  25191378 gggtagcacctatagtagaaaaattggaag-aaaatagacttagatggtttggacatgtagagagaagacc 25191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 26490317 - 26490374
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgta 184  Q
    ||||||||||||||||||||| |||  | |||||||| |||||||||||||||||||||    
T  26490317 ggtagcacctatagtagaaaa-gatggtagaaaataggcttaggtggtttggacatgta 26490374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 36820242 - 36820173
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||| ||| ||| |||  |||||| ||| |||||||||||| |||||||||||||||||||    
T  36820242 gggtagcacctatattagcaaa-gatggtggaaactaggcttaggtggtttagacatgtaaagagaagacc 36820173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 47233876 - 47233808
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    ||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  47233876 ggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 47233808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 44134111 - 44134056
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacat 181  Q
    ||||||| ||| |||||||||| |||  |||||||||||||||||||||||||||||    
T  44134111 gggtagcgcctctagtagaaaa-gatggtggaaaatagacttaggtggtttggacat 44134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 22902807 - 22902862
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatg 182  Q
    |||||||||||||| |||||||||  | |||| ||||||||||| |||||||||||    
T  22902807 gtagcacctatagtcgaaaaagatggtagaaactagacttaggttgtttggacatg 22902862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 38060432 - 38060502
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||| ||||||| | |  | |||||||| ||||| ||||||||||||||| |||||||||||    
T  38060432 gggtagcacctataatagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacct 38060502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 39600962 - 39600892
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||| ||||||||||||||| |||  ||||||| |  |||||||||||| | ||||||||||||||||||    
T  39600962 gggtagtacctatagtagaaaa-gatggtggaaaacaagcttaggtggttttggcatgtaaagagaagacct 39600892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 52138801 - 52138871
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| |||||||| |||||| |||||||||||    
T  52138801 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttgggcatgtagagagaagacct 52138871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 21200567 - 21200617
Alignment:
Q  144 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||  |||||| |||||||||||||||||| |||||| |||||||||    
T  21200567 aaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagac 21200617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 28245438 - 28245503
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||||||||||||||||| | |  | |||||||||||||| |||||||| |||||| ||||||    
T  28245438 gggtagcacctatagtagaaaa-gttggtagaaaatagacttagatggtttgggcatgtagagagaa 28245503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 29919332 - 29919362
Alignment:
Q  153 tggaaaatagacttaggtggtttggacatgt 183  Q
    |||||||||||||||||||||||||||||||    
T  29919332 tggaaaatagacttaggtggtttggacatgt 29919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 29968485 - 29968515
Alignment:
Q  153 tggaaaatagacttaggtggtttggacatgt 183  Q
    |||||||||||||||||||||||||||||||    
T  29968485 tggaaaatagacttaggtggtttggacatgt 29968515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 35033147 - 35033216
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||  ||||||||||||||| ||||||||||    
T  35033147 gggtagcacctatagtagaaaa-gttggtagaaaataggcttatatggtttggacatgtagagagaagacc 35033216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 3987048 - 3987116
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||| |||||||||||||||| |||  | |||| ||||||||||||||||||  ||||| |||||||||    
T  3987048 gggtatcacctatagtagaaaa-gatggtagaaactagacttaggtggtttgggaatgtagagagaagac 3987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 27917571 - 27917639
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||||||||||| |||||||  | | |||||| ||||| ||||||||||||||| | |||||||    
T  27917571 gggtagcacctatagtag-aaaagatggtaggaaataggcttagatggtttggacatgtagaaagaagac 27917639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 39235168 - 39235209
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||| |||||||||||||| |||||| |||||||||||    
T  39235168 gaaaataggcttaggtggtttgggcatgtagagagaagacct 39235209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 41842792 - 41842725
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    |||||||||||||||||| |||||||  ||||||  || ||||||||||||||  ||||| ||||||||    
T  41842792 gggtagcacctatagtag-aaaagatggtggaaaccagtcttaggtggtttgggtatgtagagagaaga 41842725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 44149 - 44079
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| |||   ||||||||| |||||||||||||| |||||| |||||||||||    
T  44149 gggtagcacctatagtagaaaa-gatggcggaaaataggcttaggtggtttgggcatgtagagagaagacct 44079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 33667217 - 33667287
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| |||  | |||| |||||||||||||||||| |||||| |||||||||||    
T  33667217 gggtagcacctatagtagaaaa-gatggtagaaactagacttaggtggtttgggcatgtagagagaagacct 33667287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 27891 - 27944
Alignment:
Q  122 ttagggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttg 176  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  27891 ttagggtagcacctatagtag-aaaagatgatggaaaataggcttaggtggtttg 27944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 31636201 - 31636132
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| |||  | |||| |||||||||||||||||| |||||| ||||||||||    
T  31636201 gggtagcacctatagtagaaaa-gatggtagaaactagacttaggtggtttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 79514 - 79585
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||| ||||||||||||||| |||  ||||||| | | |||||||||||||||||||| ||||||||||||    
T  79514 gggtagtacctatagtagaaaa-gatggtggaaaacataattaggtggtttggacatgtagagagaagaccta 79585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 14667764 - 14667815
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttgg 177  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  14667764 gggtagcacctatagtagaaaa-gatggtggaaaatagacttaggtggtttgg 14667815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 28676596 - 28676666
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||| ||||||||||||| |||  |||||||||| |||||||||||| | |||||| |||||||||||    
T  28676596 gggtagcagctatagtagaaaa-gatggtggaaaatagtcttaggtggtttcggcatgtagagagaagacct 28676666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 14665715 - 14665784
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    ||||||||||||||||||| || | | || |||||||| ||||| ||||||||||||||| ||||||||||    
T  14665715 gggtagcacctatagtagagaa-gttgatagaaaataggcttagatggtttggacatgtagagagaagacc 14665784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 16347659 - 16347590
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  16347659 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 16347590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 38684968 - 38685037
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  38684968 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 38685037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 6888994 - 6889062
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||| ||||| || |||||||  |||||||||| |||| |||||||||||||||| |||||||||    
T  6888994 gggtagcacgtatag-aggaaaagatggtggaaaataggcttaagtggtttggacatgtagagagaagac 6889062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 14749310 - 14749378
Alignment:
Q  127 gtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||  |  | |||| ||||||||| ||||||||||||||| |||||||||||    
T  14749310 gtagcacctatagtagaaaaat-tggtagaaactagacttagatggtttggacatgtagagagaagacct 14749378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 3301844 - 3301914
Alignment:
Q  124 agggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||| |||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  3301844 agggtagcccctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 3301914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 15168793 - 15168850
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgt 183  Q
    |||||||||||||||||| |||||||  | |||||||| || |||||||||||||||||    
T  15168793 gggtagcacctatagtag-aaaagatggtagaaaataggctaaggtggtttggacatgt 15168850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 42199305 - 42199355
Alignment:
Q  144 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||  |||||| |||||||||||||||||| |||||| |||||||||    
T  42199305 aaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagac 42199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4026599 - 4026546
Alignment:
Q  143 aaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||  |||||| ||| ||||||||||||||||||||| |||| ||||||    
T  4026599 aaaaagatggtggaaactagtcttaggtggtttggacatgtagagaggagacct 4026546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 6859382 - 6859450
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||||||||||| ||| |||||  ||||||| || | ||||||||||||||| ||| |||||||||    
T  6859382 gggtagcacctatagt-gaagaagatggtggaaaacaggcataggtggtttggacacgtagagagaagac 6859450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 26884971 - 26884902
Alignment:
Q  124 agggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    |||||||||||||||| || ||||| |  | |||||||| |||||| |||||||||||||| ||| ||||    
T  26884971 agggtagcacctatagcaggaaaagttggtagaaaataggcttaggcggtttggacatgtagagataaga 26884902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 1525674 - 1525714
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||| ||||||||||||| ||||||||||| ||||||||||    
T  1525674 gaaactagacttaggtggcttggacatgtagagagaagacc 1525714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 2712979 - 2713015
Alignment:
Q  160 tagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||| |||||| |||||||||||    
T  2712979 tagacttaggtggtttgggcatgtagagagaagacct 2713015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 38341698 - 38341647
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttgg 177  Q
    |||||||| ||||||||||||| || | |||||||||| ||||||||||||||    
T  38341698 gggtagcagctatagtagaaaa-gacagtggaaaataggcttaggtggtttgg 38341647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 45512776 - 45512709
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaaga 193  Q
    |||||||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||| |||||||||||    
T  45512776 gggtagcacctatagtagaaaa-gatgatggaaaataagcttagatggtttgggcatataaagagaaga 45512709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 45419238 - 45419308
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| |||  |  |||||||||||||||||||||| |||||| ||| |||||||    
T  45419238 gggtagcacctatagtagaaaa-gatggtataaaatagacttaggtggtttgggcatgtagagataagacct 45419308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 9695632 - 9695698
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaag 192  Q
    |||||||||||||||||| |||||||  |||||| | | |||||||||||||| |||||| |||||||    
T  9695632 gggtagcacctatagtag-aaaagatggtggaaactcggcttaggtggtttgggcatgtagagagaag 9695698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 36143367 - 36143437
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||||| |||| | |||  ||||||||||||||||||||||||| ||| || ||| ||||||||    
T  36143367 ggtagcacctatagcagaata-gatggtggaaaatagacttaggtggtttgggcatttagagaaaagaccta 36143437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 39946858 - 39946928
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| | |||||||||    
T  39946858 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagaaagaagacct 39946928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 41444607 - 41444549
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgta 184  Q
    |||||||||||||||||| |||||||  |||||| |||  ||||||||||||||||||||    
T  41444607 gggtagcacctatagtag-aaaagatggtggaaactaggtttaggtggtttggacatgta 41444549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 9905132 - 9905094
Alignment:
Q  156 aaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  9905132 aaaataggcttaggtggtttggacatgtagagagaagac 9905094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 13171926 - 13171865
Alignment:
Q  129 agcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 191  Q
    |||||||||||||||||| |||  |||||||||  |||||||||||||| ||| |||||||||    
T  13171926 agcacctatagtagaaaa-gatggtggaaaatatgcttaggtggtttgggcatataaagagaa 13171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 29645044 - 29645109
Alignment:
Q  131 cacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||||||| |||| |||  ||||||||||  |||  ||||||||||||||||||||||||||||    
T  29645044 cacctatagtataaaa-gatggtggaaaataggtttaattggtttggacatgtaaagagaagaccta 29645109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 43904908 - 43904875
Alignment:
Q  164 cttaggtggtttggacatgtaaagagaagaccta 197  Q
    ||||||||||||||||||||| ||||||||||||    
T  43904908 cttaggtggtttggacatgtagagagaagaccta 43904875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 34196073 - 34196141
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||||||||||||| | | | |||| |||||||| ||||||||| |||||  |||||||||||    
T  34196073 gggtagcacctatagtagaaaaa-acagtagaaactagacttatgtggtttgggcatgt--agagaagacct 34196141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 41972061 - 41971991
Alignment:
Q  122 ttagggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    |||||||| |||||| ||||||||| |||  |||||||||   |||||||||||||||||||| |||||||||    
T  41972061 ttagggtaacaccta-agtagaaaa-gatggtggaaaataagtttaggtggtttggacatgtagagagaagac 41971991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 42854256 - 42854216
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  42854256 gaaaataggcttagatggtttggacatgtagagagaagacc 42854216  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 608157 - 608228
Alignment:
Q  124 agggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||| |||||||||||||||| | | || |||||||| ||||| ||||||||||||||| |||||||||||    
T  608157 agggtatcacctatagtagaaaa-gttgatagaaaataggcttagatggtttggacatgtagagagaagacct 608228  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 5258429 - 5258360
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||||||||||||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||||    
T  5258429 gggtagcacctatagtagaaaa-gttggtagaaaataggcttagatggtttggacatgtagagagaagacc 5258360  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 24665840 - 24665881
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  24665840 gaaaataggcttaggtggtttggacatgtagagagaagacct 24665881  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 14389447 - 14389378
Alignment:
Q  126 ggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 197  Q
    |||||||||||| |||||||| |||  ||||||  | |||||||||||||||||||||| ||||||||||||    
T  14389447 ggtagcacctatcgtagaaaa-gatggtggaaacaa-acttaggtggtttggacatgtagagagaagaccta 14389378  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 33084059 - 33084129
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 196  Q
    ||||||||||||| |||||||| |||  | |||| ||||||||||||||||||  ||||| |||||||||||    
T  33084059 gggtagcacctatggtagaaaa-gatggtagaaactagacttaggtggtttgggaatgtagagagaagacct 33084129  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 31818533 - 31818582
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggttt 175  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||||||    
T  31818533 gggtagcacctatagtacaaaaa-atggtggaaaatagacttaggtggttt 31818582  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 9593987 - 9593919
Alignment:
Q  125 gggtagcacctatagtagaaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 194  Q
    ||||||||||  |||||||||| |||  | |||||||| |||||||||||||| |||||| |||||||||    
T  9593987 gggtagcaccattagtagaaaa-gatggtagaaaataggcttaggtggtttgggcatgtagagagaagac 9593919  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 86861 - 86821
Alignment:
Q  155 gaaaatagacttaggtggtttggacatgtaaagagaagacc 195  Q
    |||||||| ||||| | ||||||||||||||||||||||||    
T  86861 gaaaatagtcttagatagtttggacatgtaaagagaagacc 86821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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