View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_22 (Length: 304)
Name: NF0542_high_22
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 67 - 294
Target Start/End: Complemental strand, 6707072 - 6706837
Alignment:
| Q |
67 |
cattaagcatatcctagactccatattgcttatctaaataaaaagtta--------gattcatattaaaagcaaataaatctatatactaaacctatgtg |
158 |
Q |
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| T |
6707072 |
cattaagcatatcctagacttcatattgcttatctaaataaaaatttaaaaatctagaatcatattaaaagcaaataaatctatatactaaacctatgtg |
6706973 |
T |
|
| Q |
159 |
taaaacactagcaaatataaaatttattacacataccaactcagtggcaaaaaagacaaattggtaattacaaaaattagggttctttagagtggcccgt |
258 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6706972 |
taaaacactagcaaatataaaatttattaaacacaccaactcagcagcaaaaaagacaaattggtaattacaaaaattagggttctttagagtggcccgt |
6706873 |
T |
|
| Q |
259 |
actacctagtgtcactttcaatccagaaaattcatc |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6706872 |
actacctagtgtcactttcaatccagaaaattcatc |
6706837 |
T |
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