View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_high_25 (Length: 291)

Name: NF0542_high_25
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_high_25
NF0542_high_25
[»] chr7 (1 HSPs)
chr7 (9-268)||(44674297-44674556)
[»] chr1 (2 HSPs)
chr1 (104-245)||(17177528-17177669)
chr1 (123-199)||(2003899-2003975)
[»] scaffold0013 (1 HSPs)
scaffold0013 (124-212)||(42805-42893)
[»] chr4 (1 HSPs)
chr4 (104-231)||(27011028-27011155)
[»] chr3 (1 HSPs)
chr3 (102-213)||(12527943-12528054)
[»] chr8 (3 HSPs)
chr8 (90-202)||(13701837-13701949)
chr8 (30-166)||(9530009-9530145)
chr8 (72-151)||(13813031-13813110)
[»] scaffold0381 (1 HSPs)
scaffold0381 (104-191)||(8631-8718)
[»] chr5 (2 HSPs)
chr5 (18-79)||(12746502-12746563)
chr5 (18-79)||(12809586-12809647)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 44674297 - 44674556
Alignment:
Q  9 tcaatatcgatgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttgtatctcgtattttcaaggctaagtactttccaacgaaatcct 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44674297 tcaatatcgatgtgaggcaagtaaggttggaagtttctcacggaacctaatactcttgtatctcgtattttcaagcctaagtactttccaacgaaatcct 44674396  T
Q  109 ttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcataggctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44674397 ttctcaatgcatccattggccataatccgagctatgtatggcgcaacattctttgtgcccgattcattgtgcgtggtggagcacgatggagcataggctc 44674496  T
Q  209 tggtgagatgattcctattcttggagcaccctggttgtctaatggtgcgtgtattgatga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44674497 tggtgagatgattcctattcttggagcaccctggttgtctaatggtgcgtgtattgatga 44674556  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 17177528 - 17177669
Alignment:
Q  104 atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcata 203  Q
    |||||||||||||||   |||||| || |||||||||||||| ||||| |  ||| | |||||||| || |||||||||||||||||| |||||||| |     
T  17177528 atcctttctcaatgccaacattggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcgtt 17177627  T
Q  204 ggctctggtg-agatgattcctattcttggagcaccctggttg 245  Q
    |||||||||| | || |||||||||||||  ||||| ||||||    
T  17177628 ggctctggtgcatat-attcctattcttgatgcaccatggttg 17177669  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 2003975 - 2003899
Alignment:
Q  123 attggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggag 199  Q
    |||||||| ||||| || |||||  |||| |||||||||||||| || |||||||| || ||||| ||||| |||||    
T  2003975 attggccacaatccaagttatgtgcggcgtaacattcttcgtgctcgtttcattgttcgaggtggggcacggtggag 2003899  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 42805 - 42893
Alignment:
Q  124 ttggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcataggctctggt 212  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| || |||||||| || || ||||||    
T  42805 ttggtcataacccgagttatgtgtggcgcaacattcttcgtgcccgttttattgtccgtggtggcgctcgatggagtattgggtctggt 42893  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 27011155 - 27011028
Alignment:
Q  104 atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcata 203  Q
    |||||||||||||||   ||| || || |||||||||||||| ||||| |  ||| | |||||||| || |||||||||||||||||| ||||||||||     
T  27011155 atcctttctcaatgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcatt 27011056  T
Q  204 ggctctggtgagatgattcctattcttg 231  Q
    || | |||||  |  |||||||||||||    
T  27011055 ggttttggtgcaaatattcctattcttg 27011028  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 12528054 - 12527943
Alignment:
Q  102 aaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagca 201  Q
    |||||||||||||||||   |||||| || |||||||| ||||| ||| | | |||| | ||| |||| || |||||||||||||||||| |||||||||    
T  12528054 aaatcctttctcaatgccaacattggtcacaatccgagttatgtttggtggagcattttacgttcccgctttattgtgcgtggtggagcaagatggagca 12527955  T
Q  202 taggctctggtg 213  Q
    | || |||||||    
T  12527954 tcggttctggtg 12527943  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 13701949 - 13701837
Alignment:
Q  90 tactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggag 189  Q
    |||||||| || |||||||||||||||||   |||||| || |||||||| ||||| || || |||||| | ||| |||  || |||||| |||||||||    
T  13701949 tactttccgactaaatcctttctcaatgccaacattggtcacaatccgagttatgtttgacggaacattttacgttccctctttattgtgtgtggtggag 13701850  T
Q  190 cacgatggagcat 202  Q
    || ||||||||||    
T  13701849 caagatggagcat 13701837  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 9530009 - 9530145
Alignment:
Q  30 caaggttggaagtttctcacggaacctaatactcttgtatctcgtattttcaaggctaagtactttccaacgaaatcctttctcaatgcatccattggcc 129  Q
    ||||| ||||| ||||| || ||  ||||| |||| ||||  || ||||||||||| | ||||||||| |  |||||||| || ||||| || |||||||    
T  9530009 caaggatggaaatttcttacagagactaattctctagtatgccgcattttcaaggcgaggtactttccgaataaatccttccttaatgcgtctattggcc 9530108  T
Q  130 ataatccgagctatgtatggcgcaacattcttcgtgc 166  Q
    | ||| |||||||||| ||||| | ||| ||||||||    
T  9530109 acaattcgagctatgtgtggcgtagcatacttcgtgc 9530145  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 13813110 - 13813031
Alignment:
Q  72 cgtattttcaaggctaagtactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcg 151  Q
    |||||||| |||||||| ||||||||| | | |||||||||||||||    || |||||||| ||||||||||| |||||    
T  13813110 cgtatttttaaggctaaatactttccatctacatcctttctcaatgccaaaataggccataacccgagctatgtgtggcg 13813031  T

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Target: scaffold0381 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 8631 - 8718
Alignment:
Q  104 atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagca 191  Q
    |||||||||||||||   ||| || || |||||||||||||| ||||| |  ||| | |||||||| || ||||||||||||||||||    
T  8631 atcctttctcaatgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagca 8718  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 12746563 - 12746502
Alignment:
Q  18 atgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttgtatctcgtatttt 79  Q
    |||| |||||||||||||||||| |||||| | |||||  || ||||||||||| |||||||    
T  12746563 atgttaggcaagcaaggttggaaatttctctcagaaccacattctcttgtatcttgtatttt 12746502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 12809647 - 12809586
Alignment:
Q  18 atgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttgtatctcgtatttt 79  Q
    |||| |||||||||||||||||| |||||| | |||||  || ||||||||||| |||||||    
T  12809647 atgttaggcaagcaaggttggaaatttctctcagaaccacattctcttgtatcttgtatttt 12809586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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