View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_32 (Length: 251)
Name: NF0542_high_32
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 39713730 - 39713539
Alignment:
| Q |
29 |
aatagggagtatgttttatgagatatgctatatata--gcgcaacacatgacacacgaatacaaacgaaacaaatgctcgtcaaaaccccaaaccctcca |
126 |
Q |
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| T |
39713730 |
aatagggagtatcttttatgagatatgctatatatatagcgcaacacatgacacacgaatacaaacgaaacgaatgctcgtcaaaaccc-------tcca |
39713638 |
T |
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| Q |
127 |
acccca--aagtattggatcgttggtatttatcataacacatgctaaaacagtactagttactataagacaaatatgagacaagaaaatgcacatacat |
223 |
Q |
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|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39713637 |
accccattaagcattggatcgtcggtatttatcataacacatgctaaaacagtactagttactataagacaaatatgagacaagaaaatgaacatacat |
39713539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 11639501 - 11639542
Alignment:
| Q |
168 |
ctaaaacagtactagttactataagacaaatatgagacaaga |
209 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| |
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| T |
11639501 |
ctaaagcagtactagttactggaagacaaatatgagacaaga |
11639542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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