View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_39 (Length: 217)
Name: NF0542_high_39
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 44566031 - 44565842
Alignment:
| Q |
1 |
atattcgtccggttgataccatcatgtcacaatgcacgtgagaaattgccaggtcaaccccaaaaatacttaaaggcactatgtaaaactatttttccat |
100 |
Q |
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| T |
44566031 |
atattcgtccggttgataccatcatatcacaatgcacgtgagaaattgccaggtcaaccccaaaaatacttaaaggcactatgtaaaactatttttccat |
44565932 |
T |
|
| Q |
101 |
gttgtatttactaacattattcttcttttcagcataatctgctatgattctacttgaatttttcaaccattagcagttacctacattatg |
190 |
Q |
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| T |
44565931 |
gttgtatttactaacattattcttcttttcagcattatctgctatgattctacttgaatttttcaaccattagcagttacctacattatg |
44565842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 36034849 - 36034963
Alignment:
| Q |
76 |
gcactatgtaaaactatttttccatgttgtatttactaacattattcttcttttcagcataatctgctatgattctacttgaatttttcaaccattagca |
175 |
Q |
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| T |
36034849 |
gcactatgcaatactattttcccctgttgtttttactaacgcaggttttcttcccagcattatctgctatagttttacttgaatctctcaaccactagga |
36034948 |
T |
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| Q |
176 |
gttacctacattatg |
190 |
Q |
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| T |
36034949 |
gttacctacattatg |
36034963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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