View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_4 (Length: 626)
Name: NF0542_high_4
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Original strand, 1967022 - 1967625
Alignment:
| Q |
15 |
tattggcaaagaacaaaacttccatatgcaacaagttttaaaccacaaaactcttacagacgacaagttgctgatgcatttaaacactttccttctactg |
114 |
Q |
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| T |
1967022 |
tattggcaaagaacaaaacttccatatgcaacaagttttaaaccacaaaactcttacagacgacaagttgctgatgcatttaaacactttccttctactg |
1967121 |
T |
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| Q |
115 |
cattagcacttattgataagcttctttcaatggaaccacaaaaacgaggatctgcaacttctgctcttgagagtgaggtaattctccgcaacattctctc |
214 |
Q |
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| T |
1967122 |
cattagcacttgttgataagcttctttcaatggaaccacaaaaacgaggatctgcaacttctgctcttgagagtgaggtaattctccgcaatattctctc |
1967221 |
T |
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| Q |
215 |
ttttttctttcgttcacatatagtatgtgtgacaattagtcagtatcaaattttgaattttacaatgagctccaagagcttatcattataatggagtctt |
314 |
Q |
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| T |
1967222 |
ttttttctttcgttcacatatagtatgtgtgacagttagtcagtatcaaattttgaatttttcaatgagctccaagagcttatcattataatggagtctt |
1967321 |
T |
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| Q |
315 |
taaaattgatggtgttttatttctcataattgttatggatatcctatttaccttgttaatgttcatgttggatatttgtcagttcttcactacagatcct |
414 |
Q |
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| T |
1967322 |
taaaattgatggtgttttatttcttataattgttatggatatcctatttaccttgttaatgttcgtgttggatatttgtcagttcttcactacagatcct |
1967421 |
T |
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| Q |
415 |
ctaccttgtgatcctttaagtctaccaaagtttccacctagcaaagagttcgatgtcaaacgtcgagataaagaagcaacaaggtatttcaatatacata |
514 |
Q |
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| T |
1967422 |
ctaccttgtgatcctttaagtctaccaaagtttccacctagcaaagagttcgatgtcaaacgtcgagataaagaagcaacaaggtatttcaatatacata |
1967521 |
T |
|
| Q |
515 |
ggattttaaatataaattttcttgatattactaaccttccccaaaataattcccttgtatagtttgatgctttattaaaagtgtcgtgcaaattcatggt |
614 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1967522 |
gaattttaaatataaattttcttgatattactaaccttccccaaaataattcccttgtatagtttgatgctttattaaaagtgtcgtgcaaattcatgga |
1967621 |
T |
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| Q |
615 |
tatt |
618 |
Q |
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|||| |
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| T |
1967622 |
tatt |
1967625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 39401551 - 39401593
Alignment:
| Q |
40 |
atgcaacaagttttaaaccacaaaactcttacagacgacaagt |
82 |
Q |
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| T |
39401551 |
atgcaacaagttttaaaccacataactcttacaaaggacaagt |
39401593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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