View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_6 (Length: 539)
Name: NF0542_high_6
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 35639268 - 35638832
Alignment:
| Q |
13 |
aatattgtaatgattgttattttcaatttgttttgttgacagggattgggaagcctcctggacaaatggatcctaaagcatttttgcttcaaaagtttaa |
112 |
Q |
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| T |
35639268 |
aatattgtaatgattgttattttcaatttgttttgttgacagggattgggaagcctcctggacaaatggatcctaaagcatttttgcttcaaaagtttaa |
35639169 |
T |
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| Q |
113 |
tgtaacagctagacaacgagtaagttcttggtttcctgttgaaaatacaccttttgttactctagtgtaactaaggtttcaattgggttctcatagttca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35639168 |
tgtaacagctagacaacgagtaagttcttggtttcctgttgaaaatacaccttttgttactctagtgtaactaaggtttcaattgggttctcatagttca |
35639069 |
T |
|
| Q |
213 |
cttggcaaatatcatggtggttacttgtcatgttagtgcaatgtcnnnnnnncatgtcaaatgattgggtggctctttaataattaaatattaatgtgat |
312 |
Q |
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| T |
35639068 |
cttggcaaatatcatggtggttacttgtcatgttagtgcaaggtcaaaaaaacatgtcaaatgattgggtggctctttaataattaaatattaatgtgat |
35638969 |
T |
|
| Q |
313 |
gaattggaaaacatctgggcaaatgggagcaatagttattagttgcatccaacatgaaattttctcgaacatccaaaatgaaaatagcaccagccactag |
412 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35638968 |
gaattggaaaatatttgggcaaatgggagcaatagttattagttgcatccaacatgaaattttctcgaacatccaaaatgaaaatagcaccagccactag |
35638869 |
T |
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| Q |
413 |
ctgattctatttcattttcgaacaccaggctacatcc |
449 |
Q |
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| T |
35638868 |
ctgattctatttcattttcgaacaccaggctacatcc |
35638832 |
T |
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