View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0542_high_7 (Length: 498)
Name: NF0542_high_7
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 374
Target Start/End: Original strand, 40801481 - 40801826
Alignment:
| Q |
29 |
aagagaaaggttgttaatgtgaacaaaacttcatactctcgaattctgaacaaatatattacccccggaaatggtttccaatgccaactttctgtaggct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801481 |
aagagaaaggttgttaatgtgaacaaaacttcatactctcgaattctgaacaaatatattacccccggaaatggtttccaatgccaactttctgtaggct |
40801580 |
T |
|
| Q |
129 |
gccacacgggataaccagaatggccccaaacctgcatgccagccgtttgagttccagattgtccccacatgggatataaaggagctagaggaggaagggt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801581 |
gccacacgggataaccagaatggccccaaacctgcatgccagccgtttgagttccagattgtccccacatgggatataaaggagctagaggaggaagggt |
40801680 |
T |
|
| Q |
229 |
atggttagaataatatgatggaggaccgggcacaattggtctttgaaaacaatagttcctttgagttggatcccttggatttagccatttccgatcttct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801681 |
atggttagaataatatgatggaggaccgggcataattggtctttgaagacaatagttcctttgagttggatcccttggatttagccatttccgatcttct |
40801780 |
T |
|
| Q |
329 |
tgcttcggcaagatatgtctcttatgcattctatatttctggttga |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40801781 |
tgcttcggcaagatatgtctcttatgcattctaaatttctggttga |
40801826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 17356818 - 17356862
Alignment:
| Q |
391 |
ttcttgtccttgtctaatttcttcttcttcttcaaagtatcaagc |
435 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17356818 |
ttcttgtcattgtctgatttcttcttcttcttcaaagtatcaagc |
17356862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 489
Target Start/End: Complemental strand, 53180472 - 53180350
Alignment:
| Q |
370 |
gttgagttggaagaacccttgttctt---gtccttgtctaatttcttcttcttcttcaaagtatcaagcattgcnnnnnnnctttttccgcttcaaccat |
466 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
53180472 |
gttgatttggaagaacccttgttcttcttgtccttgtccgatttcttcttcttcttcaaagtatcaagcactgcaaaaaaacgttttccgcttcaaccat |
53180373 |
T |
|
| Q |
467 |
ttcatcttcttccaaatattctt |
489 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53180372 |
ttcatcttcttccaaatattctt |
53180350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 49949179 - 49949223
Alignment:
| Q |
391 |
ttcttgtccttgtctaatttcttcttcttcttcaaagtatcaagc |
435 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
49949179 |
ttcttgtccttatcagatttcttcttcttcttcaaagtatcaagc |
49949223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 49958510 - 49958554
Alignment:
| Q |
391 |
ttcttgtccttgtctaatttcttcttcttcttcaaagtatcaagc |
435 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
49958510 |
ttcttgtccttatcagatttcttcttcttcttcaaagtatcaagc |
49958554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 487
Target Start/End: Original strand, 32518869 - 32518989
Alignment:
| Q |
370 |
gttgagttggaagaacccttgttct---tgtccttgtctaatttcttcttcttcttcaaagtatcaagcattgcnnnnnnnctttttccgcttcaaccat |
466 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
32518869 |
gttgatttggaagaaccgttgttcttcttgtccttgtctgatttcttcttcttcttcaaagtatcaagcactgcaaaaaaacctttttcgcttcaaccat |
32518968 |
T |
|
| Q |
467 |
ttcatcttcttccaaatattc |
487 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32518969 |
ctcatcttcttccaaatattc |
32518989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 369
Target Start/End: Complemental strand, 4644367 - 4644098
Alignment:
| Q |
94 |
cggaaatggtttccaatgccaactttctgtaggctgccacacgggataaccagaatggccccaaacctgcatgccagccgtttgagttccagattgtccc |
193 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | |||||||| | | | | ||||| | | | ||||| |||||| ||||| ||| ||| |
|
|
| T |
4644367 |
cggatatggcttccaatgccaactttctgtaggctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccc |
4644268 |
T |
|
| Q |
194 |
cacatgggatataaaggagctagaggaggaagggtatggttagaataatatgatggaggaccgggcacaattggtctttgaaaacaatagttcctttgag |
293 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||| || ||||||| ||||| |||| | | || ||| |||||||| | ||||||||||||||| |
|
|
| T |
4644267 |
cacatgggatatgcaggagct---ggaggaaaggtgtgattagaatgatatggtggataa---gccataatcggtctttgcatacaatagttcctttgca |
4644174 |
T |
|
| Q |
294 |
ttggatcccttggatttagccatttccgatcttcttgcttcggcaagatatgtctcttatgcattctatatttctg |
369 |
Q |
| |
|
| ||||| ||| ||||| ||||||| |||||||| | | | | | ||| |||||||| ||||||||||||||||| |
|
|
| T |
4644173 |
taggatctcttcgatttggccattttcgatcttcgtccgtgtggatgatctgtctcttgtgcattctatatttctg |
4644098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 47533720 - 47533682
Alignment:
| Q |
397 |
tccttgtctaatttcttcttcttcttcaaagtatcaagc |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47533720 |
tccttgtctaatttcttcttcttcttcaaagtatcaagc |
47533682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 817 times since January 2019
Visitors: 3657