View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_8 (Length: 451)
Name: NF0542_high_8
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 217 - 439
Target Start/End: Original strand, 10299042 - 10299264
Alignment:
| Q |
217 |
atgtgcaaatcattcccttctccctggaaatggattctctcatatgtatttgatatataagttgagtgagtaaagtgtgatatatcaccatttaaannnn |
316 |
Q |
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| T |
10299042 |
atgtgcaaatcattcccttctccctggaaatggattctctcatatgtatttgatatataagttgagtgagtaaagtgtgatttatcaccatttaaatttt |
10299141 |
T |
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| Q |
317 |
nnnnatctaaatatttcatgtgttttttcttttcatgaacgatgatacatcatactttgcactctgatgtataaattacatattagaggattcaatccac |
416 |
Q |
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| T |
10299142 |
ttttatctaaatatttcatgtgttttttcttttcatgaacgatgatacatcatactttgcactctgatgtataaattacatattagaggattcattccac |
10299241 |
T |
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| Q |
417 |
ccttctcccacaactttcatatt |
439 |
Q |
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|||||||| |||||||||||||| |
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| T |
10299242 |
ccttctccaacaactttcatatt |
10299264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 10298833 - 10298982
Alignment:
| Q |
1 |
cttattttattttttgccaatacatatagtacataaccaccaacaatttctaacaagatggtacatttttgttcttctcattaaacagattttgacgttt |
100 |
Q |
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| T |
10298833 |
cttattttattttttgccaatacatatagtacataaccaccaacaatttctaacaagatggtacatttttgttcttctcattaaacagattttgacgttt |
10298932 |
T |
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| Q |
101 |
tactgcgtctaacatggaccaccaatccaccgtaacctagttggtcgagt |
150 |
Q |
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| T |
10298933 |
tactgcgtctaacatggaccaccaatccaccgtaacctagttggtcgagt |
10298982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 10299013 - 10299043
Alignment:
| Q |
171 |
ggctttctcctttccactcaaactcatccat |
201 |
Q |
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| T |
10299013 |
ggctttctcctttccactcaaactcatccat |
10299043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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