View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_high_9 (Length: 430)
Name: NF0542_high_9
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 44566007 - 44566405
Alignment:
| Q |
1 |
atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgaca |
100 |
Q |
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| T |
44566007 |
atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgaca |
44566106 |
T |
|
| Q |
101 |
tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44566107 |
tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt-------------------tcctctagttggcacgtg |
44566187 |
T |
|
| Q |
201 |
tcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566188 |
tcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgc |
44566287 |
T |
|
| Q |
301 |
agtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaa |
400 |
Q |
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| T |
44566288 |
agtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaa |
44566387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 49 - 405
Target Start/End: Complemental strand, 36033142 - 36032794
Alignment:
| Q |
49 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg |
148 |
Q |
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| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
|
| Q |
149 |
ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct |
248 |
Q |
| |
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||||||||||||||||||| ||| | |||||||||||||| |||||||| ||| ||||||| |||||| |||| ||||||||| |||||||||||| || |
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| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct |
36032943 |
T |
|
| Q |
249 |
tgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgt |
348 |
Q |
| |
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|||||| |||||||||| ||| ||||||||||||||||| ||| | | | ||||| | | ||| | ||||||||| ||||||||||||| |
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| T |
36032942 |
tgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattgctttctgcagtatcttcgt |
36032851 |
T |
|
| Q |
349 |
aagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgcca |
405 |
Q |
| |
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|||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| |
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|
| T |
36032850 |
aagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgcca |
36032794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 257
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
108 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag |
207 |
Q |
| |
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||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| | || || || || || |||| || || ||||||||| |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
|
| Q |
208 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
257 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||| | ||||| |||||| |
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| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
337 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
396 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
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|
| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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