View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_1 (Length: 738)
Name: NF0542_low_1
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 3 - 735
Target Start/End: Complemental strand, 33120930 - 33120198
Alignment:
| Q |
3 |
aggagcagcagagaggcctaaatgttgtgttttagtgatgaccaggccttcaaaaggtgaactatctcaagatgtacaataaaacaatagcgaaaaagat |
102 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
33120930 |
aggagcaacaaagaggcctaaatgttgtgttttagtgatgaccaggcctttaaaaggtgaactatctcaagatgtacaagaaaacaatagagaaaaagat |
33120831 |
T |
|
| Q |
103 |
gaatgtgcgtttgagatgataatattgataaaatgaattatactaaccatcacttctttagaatttaaaagag--ctcggcggttggctatcattctgcc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
33120830 |
gaatgtgcgtttgagatgataatattgacggaatgaattatactaaccatcacttctttagaatttaaaagagtactcggcggttggctatcattctgtc |
33120731 |
T |
|
| Q |
201 |
aatattgtcatctcaaacacacaattgannnnnnnnnnnnnnnnnnnnn-aaacttataacatattatttacccttagaatttaaaaattctaaaggaga |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33120730 |
aatattgtcatctcaaacacacaattgatctttttttctctcatttttttaaacttataacatattatttacccttagaatttaaaaattctaaaggaga |
33120631 |
T |
|
| Q |
300 |
gtattggatttaaatttattctaaaggtaaatttttctgaacaatgttggaataaaatttacataattacaaaaaatttagttcctaaaggtcaatttgt |
399 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33120630 |
gtattggatttaaatttattccaa-ggtaaatttttctgaacaatattggattaaaatttacataattacaaaaaatttagttcctaaaggtaaatttgt |
33120532 |
T |
|
| Q |
400 |
tcataaaaaagtccaaccaaaaagcatatgttagttaacttgaagtacacggtataaataaatgaaagaagaacatagagcaatatactggattcaactt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
33120531 |
tcataaaaaagtccaaccaaaaagcatatgttagttaacttgaagtacacggtataaataaatgaaagaagaacatagagcaatatgctgtattcaactt |
33120432 |
T |
|
| Q |
500 |
ggtacattatttaaattgtacatatatgaaatggggtatacacatacatatatataatggccttgttcaatttatttatttttcgatgacatatatagga |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33120431 |
ggtacattatttaaattgtacatatatgaaatggggtatacacgtac--atatataatggccttgttcaatttatttatttttcgatgacatatatagga |
33120334 |
T |
|
| Q |
600 |
ctcgtctcgagcttaacttatgaactaggtttgttcccaagatcgaaaccaagttttctttcttcaagtaatttttccatctcctccataggaactccct |
699 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33120333 |
ctcgtcacgagcttaacttatgagctaggtttgttcccaagatcgaaaccaagttttctttcttcaagtaatttttccatctcctccattggaactccct |
33120234 |
T |
|
| Q |
700 |
tagtttctggtacaaaaataataacaaaaacaatgg |
735 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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|
| T |
33120233 |
tagtttctgggacaaaaataataacaaaaacaatgg |
33120198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 45933881 - 45933825
Alignment:
| Q |
25 |
tgttgtgttttagtgatgaccaggccttcaaaaggtgaactatctcaagatgtacaa |
81 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |
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| T |
45933881 |
tgttgtgttttagtgatgaccaagccttcaaagggtgaactatctcaagaggtacaa |
45933825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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