View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_10 (Length: 433)
Name: NF0542_low_10
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 83 - 428
Target Start/End: Complemental strand, 46894498 - 46894153
Alignment:
| Q |
83 |
aaaatattttgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacnnnnnnncaatatgatccttataaattcgttgagtttatta |
182 |
Q |
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| T |
46894498 |
aaaatattatgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacaaaaaaacaatatgatccttataaattcgttgagtttatta |
46894399 |
T |
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| Q |
183 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
282 |
Q |
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| T |
46894398 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
46894299 |
T |
|
| Q |
283 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
382 |
Q |
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| T |
46894298 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
46894199 |
T |
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| Q |
383 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgctg |
428 |
Q |
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| T |
46894198 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgctg |
46894153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 46894644 - 46894561
Alignment:
| Q |
2 |
catcagacaagttgagaagtgttggtgctacaagagttgttatttgtttttcttgatgtgttaatttgattctgaaaaatgaaa |
85 |
Q |
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| T |
46894644 |
catcagacaagttgagaagtgttggtgctacaaaagttgttatttgtttttcttgatctgttaatttgattctgaaaaatgaaa |
46894561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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