View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0542_low_12 (Length: 424)
Name: NF0542_low_12
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_12 |
 | |
|
| [»] scaffold0214 (2 HSPs) |
| | |
|
| [»] scaffold0135 (2 HSPs) |
| | |
|
| [»] scaffold0140 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 30)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2618399 - 2618109
Alignment:
| Q |
1 |
ataactcagaaaaaacaaaggaaatattattaattataaaggtaaata----gttgtgaaatcaaagatttaagaaaagaatcgatgtgaacgagga--- |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618399 |
ataactcagaaaaaacaaaggaaatattatta----taaaggtaaatatatagttgtgaaatcaaagatttaagaaaagaatcgatgtgaacgaggagga |
2618304 |
T |
|
| Q |
94 |
agagaatggagctgcaaaggaaaacaccagagaagagagggtaaagtcaagagcatgcagaggtgacaggttgcacttgcacccactcatgtactgaaag |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618303 |
agagaatggagctgcaaaggaaaacaccagagaagagagggtaaagtcaagagcatgcagaggtgacaggttgcacttgcacccactcatgtactgaaag |
2618204 |
T |
|
| Q |
194 |
tgtctcaataccaatatttttatgataattattatttttgtggggggactcaaacttaaatgagagaggctttaaactaagcttttgattttgagtgtg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618203 |
tgtctcaataccaatatttttatgataatta----ttttgtggggggactcaaacttaaatgagagaggctttaaactaagcttttgattttgagtgtg |
2618109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 295 - 386
Target Start/End: Complemental strand, 8323970 - 8323879
Alignment:
| Q |
295 |
gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8323970 |
gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
8323879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 26534762 - 26534669
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26534762 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
26534669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 791592 - 791709
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn |
392 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
791592 |
gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa |
791691 |
T |
|
| Q |
393 |
ntaaattaactagtcctt |
410 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
791692 |
ataaattaactagtcctt |
791709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 130512 - 130419
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
130512 |
gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattat |
130419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 33377912 - 33377820
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
33377912 |
gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
33377820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 42630968 - 42630878
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42630968 |
aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattat |
42630878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 5146767 - 5146675
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
5146767 |
gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
5146675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 13823413 - 13823320
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
13823413 |
ggagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta |
13823320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26534506 |
gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
26534583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 6518203 - 6518294
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||| ||||||||||||| |
|
|
| T |
6518203 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt |
6518294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 8489123 - 8489214
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
8489123 |
gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt |
8489214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 19899018 - 19898927
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
19899018 |
gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt |
19898927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 130254 - 130331
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130254 |
gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
130331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 8323707 - 8323784
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8323707 |
gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt |
8323784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 228716 - 228809
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
228716 |
ggagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta |
228809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 35454710 - 35454623
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
35454710 |
aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatt |
35454623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
42630711 |
gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt |
42630788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 40881792 - 40881881
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
40881792 |
gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt |
40881881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 14388583 - 14388515
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14388583 |
gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
14388515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 35454451 - 35454519
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35454451 |
gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
35454519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 14069861 - 14069928
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
14069861 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt |
14069928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 5146502 - 5146571
Alignment:
| Q |
291 |
tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt |
361 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5146502 |
tggagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt |
5146571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 19897228 - 19897293
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19897228 |
aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
19897293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 40882066 - 40881992
Alignment:
| Q |
310 |
gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
40882066 |
gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt |
40881992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
791867 |
gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa |
791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 13823150 - 13823233
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | || |||||| ||| ||||||||||||||| || ||||||||||| |
|
|
| T |
13823150 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgtattttttttcttttaa |
13823233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 6518466 - 6518404
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatga |
356 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
6518466 |
gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga |
6518404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 27319716 - 27319643
Alignment:
| Q |
308 |
aggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaata |
381 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||||||| |||| || || ||||||| |||||||||| |
|
|
| T |
27319716 |
aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata |
27319643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat |
354 |
Q |
| |
|
||||| |||||||| ||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
229044 |
aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat |
228987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 33022431 - 33022339
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33022431 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
33022339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 21389020 - 21389113
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
21389020 |
ggagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta |
21389113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 33022164 - 33022241
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33022164 |
gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
33022241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 7789933 - 7789842
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
7789933 |
agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta |
7789842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 21389282 - 21389217
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21389282 |
aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
21389217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 7789678 - 7789748
Alignment:
| Q |
304 |
gtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt |
375 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
7789678 |
gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt |
7789748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataat |
383 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||| ||| ||||||||||||||| ||| |||||| || ||||||||||||||||| |
|
|
| T |
28472624 |
agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat |
28472535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 29859813 - 29859723
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacg-tcgttgttttcttttaaaataat |
383 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| | || ||||||||||||||||| |
|
|
| T |
29859813 |
agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttcttttaaaataat |
29859723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 40534229 - 40534134
Alignment:
| Q |
291 |
tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40534229 |
tggagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
40534134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 3102804 - 3102711
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3102804 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattat |
3102711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 3102540 - 3102617
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3102540 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt |
3102617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13690216 |
agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt |
13690292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 18936941 - 18936850
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
18936941 |
gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt |
18936850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 37177890 - 37177799
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
37177890 |
gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt |
37177799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 9231580 - 9231657
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231580 |
gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
9231657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 40533963 - 40534040
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40533963 |
gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt |
40534040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 9231825 - 9231751
Alignment:
| Q |
312 |
acgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9231825 |
acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattat |
9231751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 11147014 - 11147083
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11147014 |
gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc |
11147083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 18381573 - 18381488
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
18381573 |
gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa |
18381488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 5121071 - 5121005
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5121071 |
gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac |
5121005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 18936676 - 18936755
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt |
373 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
18936676 |
gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttctt |
18936755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 27073172 - 27073079
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27073172 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
27073079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 33214443 - 33214536
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33214443 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
33214536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 36274120 - 36274212
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36274120 |
gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
36274212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 36635502 - 36635410
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
36635502 |
gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
36635410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 19580574 - 19580483
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
19580574 |
gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt |
19580483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 33214703 - 33214626
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33214703 |
gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
33214626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 10598810 - 10598885
Alignment:
| Q |
295 |
gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10598810 |
gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt |
10598885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 33219072 - 33219149
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
33219072 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt |
33219149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 36274389 - 36274312
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36274389 |
gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt |
36274312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatg |
355 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599062 |
gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg |
10599000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27072913 |
gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat |
27072974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 11651000 - 11651091
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| |||| | || ||||||| ||||||||||||| |
|
|
| T |
11651000 |
gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatt |
11651091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt |
361 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36635241 |
aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt |
36635305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 25)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 10227712 - 10227829
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227712 |
gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa |
10227811 |
T |
|
| Q |
393 |
ntaaattaactagtcctt |
410 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10227812 |
ataaattaactagtcctt |
10227829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 26552256 - 26552163
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26552256 |
gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat |
26552163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 23346419 - 23346510
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
23346419 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt |
23346510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 48871501 - 48871410
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
48871501 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt |
48871410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
| Q |
297 |
aattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19059378 |
aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
19059451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 50892963 - 50893055
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
50892963 |
gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
50893055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 28217783 - 28217692
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
28217783 |
gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt |
28217692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 19059633 - 19059549
Alignment:
| Q |
302 |
ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
19059633 |
ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattat |
19059549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 39669321 - 39669230
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39669321 |
agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta |
39669230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 10227976 - 10227910
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227976 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac |
10227910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 41833874 - 41833966
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||| ||| |||||| |||| ||||||| |||||| ||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
41833874 |
gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta |
41833966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
| Q |
295 |
gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
26551992 |
gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt |
26552067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 48752658 - 48752589
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48752658 |
ggagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
48752589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 50904992 - 50905080
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatat--catccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaat |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
50904992 |
agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat |
50905080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 7062034 - 7062098
Alignment:
| Q |
320 |
aacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7062034 |
aacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt |
7062098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 48871246 - 48871312
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
48871246 |
ggagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacac |
48871312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 50893227 - 50893161
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
50893227 |
ggagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacac |
50893161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 28217530 - 28217598
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28217530 |
gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc |
28217598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 42180571 - 42180639
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42180571 |
gagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtc |
42180639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 4156892 - 4156960
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4156892 |
gagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtc |
4156960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 7062260 - 7062192
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
7062260 |
gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtc |
7062192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 41834139 - 41834071
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41834139 |
gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtc |
41834071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
50905175 |
agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc |
50905107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 42180835 - 42180744
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||||||||| | | |||||| |||| ||||||| ||||||||||||||| ||||||||||||| || || |||| |||||||||||||| |
|
|
| T |
42180835 |
ggagaaattcttgtat-gaaacgaatctaa-atatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta |
42180744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
| Q |
302 |
ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca |
358 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
23346675 |
ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca |
23346620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 37994973 - 37994879
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37994973 |
ggagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattat |
37994879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 41539770 - 41539861
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
41539770 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt |
41539861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 2814508 - 2814416
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
2814508 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta |
2814416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 397269 - 397177
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
397269 |
gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
397177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 37994708 - 37994785
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
37994708 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt |
37994785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 44036814 - 44036891
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44036814 |
gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt |
44036891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 14193588 - 14193509
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14193588 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttctt |
14193509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 41540034 - 41539963
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgtt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41540034 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt |
41539963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 2814243 - 2814319
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2814243 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt |
2814319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 14193324 - 14193414
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
14193324 |
gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt |
14193414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 25101746 - 25101823
Alignment:
| Q |
309 |
ggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||| ||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
25101746 |
ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat |
25101823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 397007 - 397083
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||| |||||| ||| |||| |
|
|
| T |
397007 |
gagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgttgttttttt |
397083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 44037022 - 44036985
Alignment:
| Q |
349 |
aaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44037022 |
aaacatgacacgtcgttgttttcttttaaaataattat |
44036985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 40588054 - 40587991
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatga |
356 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
40588054 |
gagaaattctggtgtaggaacgaatttaatatatcatttttataaataacaaattaaaacatga |
40587991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 22)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 13280099 - 13280006
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13280099 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattat |
13280006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 42028578 - 42028671
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42028578 |
gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
42028671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 31860349 - 31860232
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31860349 |
gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaaaaa |
31860250 |
T |
|
| Q |
393 |
ntaaattaactagtcctt |
410 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31860249 |
ataaattaactagtcctt |
31860232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 2059748 - 2059655
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2059748 |
gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat |
2059655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 16115046 - 16115139
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16115046 |
gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat |
16115139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 7317899 - 7317806
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7317899 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattat |
7317806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 36059351 - 36059278
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36059351 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg |
36059278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 42028842 - 42028765
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42028842 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt |
42028765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 31470587 - 31470678
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31470587 |
gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
31470678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 15332926 - 15332844
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
15332926 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt |
15332844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31860079 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc |
31860148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 384
Target Start/End: Complemental strand, 38086232 - 38086140
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| |
|
|
| T |
38086232 |
ggagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt |
38086140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 7317635 - 7317712
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
7317635 |
gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt |
7317712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 38085966 - 38086038
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgtt |
365 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085966 |
ggagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt |
38086038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 2059488 - 2059567
Alignment:
| Q |
291 |
tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| || ||||||| |
|
|
| T |
2059488 |
tggagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt |
2059567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
| Q |
294 |
agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3671822 |
agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac |
3671886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13279840 |
gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat |
13279901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| || ||||||| |
|
|
| T |
16115308 |
gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt |
16115231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 292 - 384
Target Start/End: Complemental strand, 3672088 - 3671996
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt |
384 |
Q |
| |
|
|||||||||||| || ||||||||| |||| ||||||| ||||||| |||||||||||| || ||||||| ||||||| ||||||||||||| |
|
|
| T |
3672088 |
ggagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt |
3671996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 15330447 - 15330505
Alignment:
| Q |
291 |
tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
15330447 |
tggagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa |
15330505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 31470842 - 31470776
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
31470842 |
ggagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacac |
31470776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 36059248 - 36059277
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaac |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36059248 |
gagaaattcttgtgtaggaacgaacctaac |
36059277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 7298635 - 7298727
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
7298635 |
gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta |
7298727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 40521280 - 40521188
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
40521280 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta |
40521188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 19805678 - 19805585
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19805678 |
gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattat |
19805585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 19804797 - 19804874
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
19804797 |
gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt |
19804874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 40521016 - 40521084
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
40521016 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc |
40521084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 7298900 - 7298833
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
7298900 |
gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt |
7298833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 28949070 - 28949001
Alignment:
| Q |
292 |
ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
28949070 |
ggagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc |
28949001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 46567960 - 46568025
Alignment:
| Q |
296 |
aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46567960 |
aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtc |
46568025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 16979681 - 16979613
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc |
362 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
16979681 |
gagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtc |
16979613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 46568196 - 46568130
Alignment:
| Q |
319 |
taacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta |
385 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
46568196 |
taacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta |
46568130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 297 - 386
Target Start/End: Original strand, 11630 - 11719
Alignment:
| Q |
297 |
aattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
11630 |
aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattat |
11719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 11891 - 11814
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11891 |
gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
11814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 37446 - 37523
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446 |
gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt |
37523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 37691 - 37617
Alignment:
| Q |
312 |
acgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat |
386 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37691 |
acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattat |
37617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 15847 - 15915
Alignment:
| Q |
293 |
gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15847 |
gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt |
15915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 16074 - 16045
Alignment:
| Q |
295 |
gaaattcttgtgtaggaacgaacctaacat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16074 |
gaaattcttgtgtaggaacgaacctaacat |
16045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 844 times since January 2019
Visitors: 3657