View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_14 (Length: 412)

Name: NF0542_low_14
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_14
NF0542_low_14
[»] chr8 (1 HSPs)
chr8 (17-384)||(4580272-4580652)
[»] chr7 (1 HSPs)
chr7 (117-167)||(14254992-14255042)
[»] chr6 (2 HSPs)
chr6 (117-167)||(4283691-4283741)
chr6 (117-167)||(16001193-16001243)
[»] chr4 (1 HSPs)
chr4 (117-167)||(33580294-33580344)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 4580652 - 4580272
Alignment:
Q  17 atcaaaacaaattttatatcagtaatattcatgttataagtctttcacaattaagatattctagttgccttttataaagcttatgtatagtggtgaaact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4580652 atcaaaacaaattttatatcagtaatattcatgttataagtctttcacaattaagatattctagttgccttttataaagcttatgtatagtggtgaaact 4580553  T
Q  117 ttttggttaatattcatgttataaggcttctataagtctttcacaat------------caagacatgttatcccacaaatgaaaccattcccaccaatc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||| |||||||||||||||||||||||||||||||||||    
T  4580552 ttttggttaatattcatgttataaggcttctataagtctttcacaatcaagtcatgttacaagaaatgttatcccacaaatgaaaccattcccaccaatc 4580453  T
Q  205 aagatattttagtacaaggctatcataccatattctacaagcaactaccaaatttcaataaccaaaaatatcaaatacagtatcaaaaacttcaatataa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4580452 aagatattttagtacaaggctatcataccatattctacaagcaactaccaaatttcaataaccaaaaatatcaaatacagtatcaaaaacttcaatataa 4580353  T
Q  305 cattcctt-nnnnnnnnnnnnnnnnncttcaatataacacatcccctaaacctgataatgatcaaacatcaagatggaatt 384  Q
    ||||||||                  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4580352 cattccttaaaaaataaaaaataaaacttcaatataacacatcccctaaaccttataatgatcaaacatcaagatggaatt 4580272  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 14254992 - 14255042
Alignment:
Q  117 ttttggttaatattcatgttataaggcttctataagtctttcacaatcaag 167  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14254992 ttttggttaatattcatgttataaggcttttataagtctttcacaatcaag 14255042  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 4283691 - 4283741
Alignment:
Q  117 ttttggttaatattcatgttataaggcttctataagtctttcacaatcaag 167  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4283691 ttttggttaatattcatgttataaggcttttataagtctttcacaatcaag 4283741  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 16001193 - 16001243
Alignment:
Q  117 ttttggttaatattcatgttataaggcttctataagtctttcacaatcaag 167  Q
    ||||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  16001193 ttttggttaatattcatgttataaggcttttataaatcttttacaatcaag 16001243  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 33580344 - 33580294
Alignment:
Q  117 ttttggttaatattcatgttataaggcttctataagtctttcacaatcaag 167  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  33580344 ttttggttaatattcatgttataaggcttttataagtcttttacaatcaag 33580294  T

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