View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_16 (Length: 387)
Name: NF0542_low_16
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 108 - 257
Target Start/End: Original strand, 41183569 - 41183718
Alignment:
| Q |
108 |
aacaagataattttagaggagcaatttctatgtgtagttacatcacttacattgttgaaatatttatgtctattatttatgtggtttaacgaagcatgta |
207 |
Q |
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| T |
41183569 |
aacaagataattttagaggagcaatttctatgtgtagttacatcacttacattgttgaaatatttatgtctattatttatgtggtttaacgaagcatgta |
41183668 |
T |
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| Q |
208 |
gttgttcatcatgttagtttatatatgtattgttgtgatccttgaaggta |
257 |
Q |
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| T |
41183669 |
gttgttcatcatgttagtttatatatgtattgttgtgatccttgaaggta |
41183718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 281 - 387
Target Start/End: Original strand, 41183745 - 41183851
Alignment:
| Q |
281 |
agtgtgagtataaaatgcaatatgcatttgaagggattctaatttgtttaactattgtttctagaaagtgaatatttttatgaagtgtgtttttataact |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41183745 |
agtgtgagtataaaatgcaatatgcatttgaagggattctaatttgtttaactattgtttctagaaagcgaatatttttatgaagtgtgtttttataact |
41183844 |
T |
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| Q |
381 |
ttcttat |
387 |
Q |
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| T |
41183845 |
ttcttat |
41183851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 40234370 - 40234334
Alignment:
| Q |
351 |
aatatttttatgaagtgtgtttttataactttcttat |
387 |
Q |
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| T |
40234370 |
aatatttttatgaagggtgtttttataactttcttat |
40234334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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