View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_17 (Length: 374)
Name: NF0542_low_17
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 46551889 - 46552253
Alignment:
| Q |
15 |
cttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgtttgtttgactttccttttaaagtcatttgagagataattacataatgagtga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
46551889 |
cttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgtttgtttgactttccttttaaagtcattttagagataattacataatgagtaa |
46551988 |
T |
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| Q |
115 |
attgtcattttggc---------------actatcactatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttc |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46551989 |
attgtcattttggcccttgaatgtgagtcactatcactatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttc |
46552088 |
T |
|
| Q |
200 |
ttgcattttatatcctacccctctttttatttgaaattttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552089 |
ttgcattttatatcctacccctctttttatttgaaattttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattt |
46552188 |
T |
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| Q |
300 |
tgaaatcaatcataaacccacacaatggcctgataatgctggcaaacatctatctttcacctatg |
364 |
Q |
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| T |
46552189 |
tgaaatcaatcataagcccacacaatggcctgataatgctggcaaacatctatctttcacctatg |
46552253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 139 - 364
Target Start/End: Original strand, 1028581 - 1028806
Alignment:
| Q |
139 |
tatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctctttttatttgaaattt |
238 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1028581 |
tatcaaaattacaaaacatgcctaaattacgtacataattgaattcaatgttcgctatttcttgcattttatatcctacccttctttttatttgaaattt |
1028680 |
T |
|
| Q |
239 |
tcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataaacccacacaatggcctgataatgc |
338 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1028681 |
tcactttgggattatatgatttaatgagttaataaataaaatgcttgagttggtagcattgtgaaatcaatcctaaacccacacaatggcctgatagtgc |
1028780 |
T |
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| Q |
339 |
tggcaaacatctatctttcacctatg |
364 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1028781 |
tggcaaacatctatctttcacctatg |
1028806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 1028429 - 1028542
Alignment:
| Q |
15 |
cttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgtttgtttgactttccttttaaagtcatttgagagataattacataatgagtga |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |
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| T |
1028429 |
cttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgtttgtttgactttccttttaaagtcattttagagataattacataacgagtaa |
1028528 |
T |
|
| Q |
115 |
attgtcattttggc |
128 |
Q |
| |
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|||||||||||||| |
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|
| T |
1028529 |
attgtcattttggc |
1028542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 40831058 - 40831168
Alignment:
| Q |
15 |
cttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgtttgtttgactttcctttta--aagtcatttgagagataattacataatgagt |
112 |
Q |
| |
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|||| ||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
40831058 |
cttcagcttcccctcggcggtatttcttcgaggcaagatgctgta----tgtttaactttccttttattctggcattttagagataattacataatgagt |
40831153 |
T |
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| Q |
113 |
gaattgtcattttgg |
127 |
Q |
| |
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|||| ||||||||| |
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|
| T |
40831154 |
aaattatcattttgg |
40831168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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