View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_19 (Length: 373)
Name: NF0542_low_19
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 45350677 - 45350318
Alignment:
| Q |
1 |
caacaaacaaagttactctttgcagttgatggaaggccaagattcattcccccaattccaaagggatattttggtaatgctattgtgctaacaaattctt |
100 |
Q |
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| T |
45350677 |
caacaaacaaagttactctttgcagttgatggaaggccaagattcattcccccaattccaaagggatattttggtaatgctattgtgctaacaaattctt |
45350578 |
T |
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| Q |
101 |
tgtgtaaagcaaatgaactattggagaatcctttttcattttcagttggcttggttcacaaggcaattgatatggttacagatagttatatgagatctgc |
200 |
Q |
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| T |
45350577 |
tgtgtaaagcaaatgaactattggagaatcctttttcattttcagttggcttggttcacaaggcaattgatatggttacagatagttatatgagatctgc |
45350478 |
T |
|
| Q |
201 |
tattgattattttgaagttacaagagctaggccttctttaacaggcacacttttgattacaacttggactaaattgtcttttgacactactgattttggt |
300 |
Q |
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| T |
45350477 |
tattgattattttgaagttacaagagctaggccttctttaacaggcacacttttgattacaacttggactaaattgtcttttgacactactgattttggt |
45350378 |
T |
|
| Q |
301 |
tggggtgaacctctatgttctggtcctgttacattgccaaatacagaagttattttgttc |
360 |
Q |
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| T |
45350377 |
tggggtgaacctctatgttctggtcctgttacattgccaaatacagaagttattttgttc |
45350318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 40495406 - 40495138
Alignment:
| Q |
14 |
tactctttgcagttgatggaaggccaagattcattcccccaattccaaagggatattttggtaatgctattgtgctaacaaattctttgtgtaaagcaaa |
113 |
Q |
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| T |
40495406 |
tactttttgctgttgatggaagatcaagatttgttccaccaataccaaaaggttactttggaaatgcaattgtgttgtcaaatgctatgtgtaaagcaag |
40495307 |
T |
|
| Q |
114 |
tgaactattggagaatcctttttcattttcagttggcttggttcacaaggcaattgatatggttacagatagttatatgagatctgctattgattatttt |
213 |
Q |
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|| | ||| ||||||| || ||||| || | ||| || |||| |||||||| ||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
40495306 |
agagttgttgaagaatccattatcattcagtgtggaattgattaacaaagcaattgagatggtgacagatagttatatgagatctgttattgactatttt |
40495207 |
T |
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| Q |
214 |
gaagttacaagagctaggccttctttaacaggcacacttttgattacaacttggactaaattgtctttt |
282 |
Q |
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| T |
40495206 |
gaagttaaaagaagtaagccaactttaacatcaacacttttgatcacaacatggaccaggttgtctttt |
40495138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 9198078 - 9197983
Alignment:
| Q |
172 |
atggttacagatagttatatgagatctgctattgattattttgaagttacaagagctaggccttctttaacaggcacacttttgattacaacttgg |
267 |
Q |
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||||| || |||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||| | | ||||||||||| ||||||||| |
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| T |
9198078 |
atggtcactgatagttacatgagatcagctattgattattttgaggtaacaagagctaggccatctttggcttgtacacttttgatcacaacttgg |
9197983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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