View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0542_low_21 (Length: 326)
Name: NF0542_low_21
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 25850629 - 25850781
Alignment:
| Q |
77 |
cagagatatttcgcacgacaaatgtagtaaccttttatttgacnnnnnnnnnntcctacaatctatggttgtcacccccatgttgaaaatattggctcca |
176 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25850629 |
cagagatattttgcacgacat-tgtagtaaccttttatttgacaaaaaaagaatcctacaatctatggttgtcacccccatgttgaaaatattggctcca |
25850727 |
T |
|
| Q |
177 |
aatcaacaatatatatatgatggttgtcaccctcaatttcacgttaacatgtttct |
232 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25850728 |
aatca--aaaatatatatgatggttgtcaccctcaatttcacgttaacatgtttct |
25850781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1513 times since January 2019
Visitors: 3669