View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_25 (Length: 318)

Name: NF0542_low_25
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_25
NF0542_low_25
[»] chr1 (7 HSPs)
chr1 (14-318)||(26444085-26444389)
chr1 (149-286)||(4379863-4380000)
chr1 (198-286)||(9509225-9509313)
chr1 (216-286)||(18793275-18793345)
chr1 (168-288)||(51234491-51234612)
chr1 (167-259)||(26016313-26016405)
chr1 (151-271)||(52442806-52442926)
[»] chr5 (8 HSPs)
chr5 (25-204)||(18132101-18132281)
chr5 (25-214)||(43522348-43522538)
chr5 (180-283)||(22835192-22835295)
chr5 (149-286)||(21952209-21952346)
chr5 (49-159)||(22835080-22835189)
chr5 (214-288)||(32516481-32516555)
chr5 (197-284)||(36123487-36123574)
chr5 (256-310)||(18132001-18132057)
[»] chr7 (5 HSPs)
chr7 (178-252)||(36514526-36514600)
chr7 (167-240)||(23720726-23720799)
chr7 (180-303)||(30200231-30200352)
chr7 (230-286)||(27021993-27022049)
chr7 (202-258)||(34869331-34869387)
[»] chr6 (2 HSPs)
chr6 (177-219)||(18905772-18905814)
chr6 (203-284)||(546911-546992)
[»] chr4 (10 HSPs)
chr4 (202-246)||(34233360-34233404)
chr4 (167-246)||(44860730-44860809)
chr4 (201-284)||(43070053-43070136)
chr4 (223-301)||(25257851-25257929)
chr4 (178-239)||(1427597-1427658)
chr4 (167-236)||(10775759-10775828)
chr4 (149-246)||(27991742-27991839)
chr4 (197-258)||(33709825-33709886)
chr4 (216-272)||(18499798-18499854)
chr4 (179-279)||(40933190-40933290)
[»] chr3 (7 HSPs)
chr3 (183-239)||(49841503-49841559)
chr3 (182-254)||(46367702-46367776)
chr3 (220-279)||(48777509-48777568)
chr3 (167-273)||(25191255-25191361)
chr3 (180-246)||(46568005-46568071)
chr3 (180-240)||(29919193-29919253)
chr3 (180-240)||(29968346-29968406)
[»] chr8 (4 HSPs)
chr8 (173-246)||(42493631-42493704)
chr8 (212-302)||(39051063-39051155)
chr8 (178-259)||(39953578-39953659)
chr8 (202-258)||(36545058-36545114)
[»] chr2 (7 HSPs)
chr2 (221-288)||(9578986-9579053)
chr2 (202-273)||(24583906-24583977)
chr2 (178-272)||(23714559-23714653)
chr2 (178-272)||(24102231-24102325)
chr2 (204-285)||(9556656-9556737)
chr2 (202-258)||(3865983-3866039)
chr2 (202-258)||(8180691-8180747)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 26444085 - 26444389
Alignment:
Q  14 gaacaatatcaatacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaa 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |  |||||||||||||||||||    
T  26444085 gaacaatatcaatacaaacctttcattgatatacgaaattgtgcaaattattggatgattaaaattatgagtcatactatgaagttatgaaaaaggttaa 26444184  T
Q  114 tcaaacgaagattaagaaaatagattaaagttattgatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  26444185 tcaaacgaagattaagaaaatagattaaagttattgatgttgtactagacatggtgctgggctctaaagaaccaacccggaattaaattaagtgtagtat 26444284  T
Q  214 agatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctatattatctacaa 313  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26444285 agatgagaatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctataatatctacaa 26444384  T
Q  314 aggat 318  Q
    |||||    
T  26444385 aggat 26444389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 4379863 - 4380000
Alignment:
Q  149 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat 248  Q
    |||||||||| |||||  ||||| |||  |||||||||||| ||||| ||||| |||  |||   |||||| |||||||||||||||||||| ||||| |    
T  4379863 gatgttgtacgggacagagtgttaggcagtaaagaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagact 4379962  T
Q  249 aaacatgatatgactaaaaatgacaatattaaagagag 286  Q
    | | | ||||||| || ||||||||| |||| ||||||    
T  4379963 agaaaagatatgattagaaatgacaacattagagagag 4380000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 9509225 - 9509313
Alignment:
Q  198 aaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 286  Q
    |||||||| |||| | |||||| |||||||||||||||| ||||||||| || ||| ||||||| || ||||||||  |||| ||||||    
T  9509225 aaattaagcgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagag 9509313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 18793345 - 18793275
Alignment:
Q  216 atgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 286  Q
    |||||||||||| ||||||||||||  |||| || ||| ||||  |||||||||||| | |||||||||||    
T  18793345 atgatgatgttgcgttggatgtgtggaaagactagacaggatagaactaaaaatgacgacattaaagagag 18793275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 51234491 - 51234612
Alignment:
Q  168 tgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat-aaacatgatatgactaaa 266  Q
    ||||||||  |||||||||||| || || |||| || | |||   ||||||| |||||||||||||| ||||| ||||| | |||||||||| || || |    
T  51234491 tgttgggcagtaaagaaccaacacgcaaataaaataggcgtaaggtagatgaggatgttgtgttggacgtgtggtaagactaaaacatgataggattaga 51234590  T
Q  267 aatgacaatattaaagagagtt 288  Q
    ||| |||| |||| ||||||||    
T  51234591 aattacaacattagagagagtt 51234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 26016313 - 26016405
Alignment:
Q  167 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatat 259  Q
    |||||||||  ||||||||||||  |||  |||| |||| |||| | |||||| ||||||| |||||||||||| ||||| || ||| |||||    
T  26016313 gtgttgggcggtaaagaaccaacaagaacataaagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacaggatat 26016405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 52442926 - 52442806
Alignment:
Q  151 tgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataa 250  Q
    |||||||| |||||| ||||| ||   ||| ||| |||| | ||| ||||||||| |||| | | |||| |||||||||||||||||||| ||||| ||     
T  52442926 tgttgtacgggacatagtgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactag 52442827  T
Q  251 acatgatatgactaaaaatga 271  Q
    ||| |||| || || ||||||    
T  52442826 acaagataagattagaaatga 52442806  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 18132281 - 18132101
Alignment:
Q  25 atacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaatcaaacgaaga 124  Q
    ||||||| ||||||  ||||||| || || |||||||||||||  |||| ||||||  |||||| |||  ||||||||||||||| |||||||| |||||    
T  18132281 atacaaacctttcaaagatatacaaagttatgcaaattattggaggattcaaattataagtcataccatgaagttatgaaaaaggctaatcaaaggaaga 18132182  T
Q  125 ttaagaaaatagattaaagttattgatg-ttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaa 204  Q
    ||||||||| ||| |||||| | | ||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  18132181 ttaagaaaagagactaaagtaacttatgtttgtactagatatggtgttgggctctaaagaaccaacccaaaattaaattaa 18132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 43522348 - 43522538
Alignment:
Q  25 atacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaatcaaacgaaga 124  Q
    ||||||| ||||||  ||||||| || || ||||| |||||||  |||| ||||||  ||||||  ||  ||||||||||||||| |||| ||| |||||    
T  43522348 atacaaacctttcaaagatatacaaagttatgcaacttattggaggattcaaattataagtcatatcatgaagttatgaaaaaggctaatgaaaggaaga 43522447  T
Q  125 ttaagaaaatagattaaagttattgatgtt-gtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtata 214  Q
    ||||||||| ||| |||||| | | ||||| ||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  43522448 ttaagaaaagagactaaagtaacttatgtttgtactagatatggtgttgggctctaaagaaccaacccaaaattaaattaaatgtagtata 43522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 22835192 - 22835295
Alignment:
Q  180 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatta 279  Q
    ||||||||||||||||||||| ||||||| ||| |||||| || ||||||||| | ||||||||| | ||||| ||||||||||| ||||||||||||||    
T  22835192 aagaaccaacccgaaattaaactaagtgtggtaaagatgaagaggttgtgttgaaagtgtgataaaactaaacgtgatatgactagaaatgacaatatta 22835291  T
Q  280 aaga 283  Q
    ||||    
T  22835292 aaga 22835295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 21952209 - 21952346
Alignment:
Q  149 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat 248  Q
    |||| ||||| |||||  ||||||||| || |||||||||| |||| ||||||||||||||| | |||||| ||||||| |||| ||||||| ||||| |    
T  21952209 gatgctgtacgggacaaagtgttgggcgcttaagaaccaacacgaacttaaattaagtgtagaaaagatgaggatgttgcgttgcatgtgtggtaagact 21952308  T
Q  249 aaacatgatatgactaaaaatgacaatattaaagagag 286  Q
    | ||  |||| || || ||||||||  |||||||||||    
T  21952309 agacgagataagattagaaatgacagcattaaagagag 21952346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 22835080 - 22835189
Alignment:
Q  49 aaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaatcaaacgaagatt-aagaaaatagattaaagttat 147  Q
    ||||| ||||| |||||||  |||||||||||  | |||| |||  |||||||||||  || |||| ||||||||||| ||||||||| | |||||||||    
T  22835080 aaattatgcaagttattggaggattaaaattattattcataccatgaagttatgaaa--ggctaattaaacgaagatttaagaaaatatactaaagttat 22835177  T
Q  148 tgatgttgtact 159  Q
    ||||| ||||||    
T  22835178 tgatggtgtact 22835189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 32516481 - 32516555
Alignment:
Q  214 agatgatgatgttgtgttggatgtgtgataagaataaacatgatatgac-taaaaatgacaatattaaagagagtt 288  Q
    ||||||||||||||||||||||||||| ||||| || ||| |||| ||| || ||||||||| |||| ||||||||    
T  32516481 agatgatgatgttgtgttggatgtgtggtaagactagacaggata-gacttagaaatgacaacattagagagagtt 32516555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 36123574 - 36123487
Alignment:
Q  197 taaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 284  Q
    |||| |||| |||| | |||||| |||||||||||||||||||  ||| | ||||||||||   | ||||||||||||||||| ||||    
T  36123574 taaaataagcgtagcagagatgaagatgttgtgttggatgtgttgtaaaactaaacatgatggaattaaaaatgacaatattagagag 36123487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 18132057 - 18132001
Alignment:
Q  256 atatgactaaaaatgacaatatt--aaagagagttaagataacacctatattatcta 310  Q
    ||||||||| |||||||||||||  | |||||||||||||||||| |||| ||||||    
T  18132057 atatgactagaaatgacaatatttaagagagagttaagataacacatataatatcta 18132001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 36514600 - 36514526
Alignment:
Q  178 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaac 252  Q
    |||||||||||| ||||| |||||||||||||| | |||||| ||||||| |||||||||||| ||||| |||||    
T  36514600 taaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaac 36514526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 23720726 - 23720799
Alignment:
Q  167 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 240  Q
    |||||||||| |||||||||||| || |  ||||| |||||||||| ||||||  |||||||||||||||||||    
T  23720726 gtgttgggctttaaagaaccaacacggatataaatgaagtgtagtagagatgagaatgttgtgttggatgtgtg 23720799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 30200352 - 30200231
Alignment:
Q  180 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatta 279  Q
    ||||||||||  | || |||| ||||||||| | |||||| |||||||||||||||||||| ||||| || |   ||||||| || ||||||||| |||     
T  30200352 aagaaccaacttggaaataaactaagtgtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatt- 30200254  T
Q  280 aagagagttaagataacacctata 303  Q
     ||||||||| | |||||||||||    
T  30200253 -agagagttagggtaacacctata 30200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 27022049 - 27021993
Alignment:
Q  230 ttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 286  Q
    ||||||||||||||||| || ||| |||| || |||||||||||| |||| ||||||    
T  27022049 ttggatgtgtgataagactagacaggataggattaaaaatgacaacattagagagag 27021993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 34869331 - 34869387
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 258  Q
    ||||||||||| |||||| ||||||| |||||||| ||| ||||| || ||||||||    
T  34869331 taagtgtagtagagatgaggatgttgcgttggatgagtggtaagactagacatgata 34869387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 18905772 - 18905814
Alignment:
Q  177 ctaaagaaccaacccgaaattaaattaagtgtagtatagatga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18905772 ctaaagaaccaacccgaaattaaattaagtgtagtatagatga 18905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 546911 - 546992
Alignment:
Q  203 aagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 284  Q
    |||||||||| | || | ||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||||| ||||    
T  546911 aagtgtagtaaaaataaggatgttgcgttggatgtgtgataaaactagataagatatgattaaaaatgaccatattagagag 546992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 34233404 - 34233360
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 246  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  34233404 taagtgtagtggagatgatgatgttgtgttggatgtgtgataaga 34233360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 44860730 - 44860809
Alignment:
Q  167 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 246  Q
    |||||||||| | |||||||||   |||| |||||||||||||| | | |||| |||||||||||||||||||| |||||    
T  44860730 gtgttgggctgtgaagaaccaaggagaaaataaattaagtgtagcagaaatgaggatgttgtgttggatgtgtggtaaga 44860809  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 43070136 - 43070053
Alignment:
Q  201 ttaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 284  Q
    |||||||||| | ||||||| |||||| |||||||||||| ||||| || ||| |||| || || ||||||||| |||| ||||    
T  43070136 ttaagtgtagcagagatgatcatgttgggttggatgtgtggtaagattagacaggataggattagaaatgacaacattagagag 43070053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 25257929 - 25257851
Alignment:
Q  223 tgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacaccta 301  Q
    |||||||||||||||||  ||||| || ||||||||  | || ||||||||| |||| |||||||| || |||||||||    
T  25257929 tgttgtgttggatgtgtagtaagactagacatgatagaattagaaatgacaacattagagagagttgaggtaacaccta 25257851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 1427658 - 1427597
Alignment:
Q  178 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgt 239  Q
    |||||||| |||  |||||| | |||||||||| ||||||||  ||||||||||||||||||    
T  1427658 taaagaactaacatgaaattgatttaagtgtagcatagatgagaatgttgtgttggatgtgt 1427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 10775828 - 10775759
Alignment:
Q  167 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatg 236  Q
    |||||||||  |||||||| ||  | ||| ||||||||| |||| | |||||||||||||||||||||||    
T  10775828 gtgttgggcggtaaagaactaatgcaaaaataaattaagcgtagcagagatgatgatgttgtgttggatg 10775759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 27991839 - 27991742
Alignment:
Q  149 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 246  Q
    |||||| ||| ||||| |||||| |||  | || ||||||| ||||  |||| ||||||||| | | |||| |||||||||||||||||||| |||||    
T  27991839 gatgttatacgggacagggtgttaggcagtgaataaccaacacgaacataaaataagtgtagcagaaatgaagatgttgtgttggatgtgtggtaaga 27991742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 33709825 - 33709886
Alignment:
Q  197 taaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 258  Q
    |||||||||  ||| | |||||||||||||| |||||||||||| ||||| || ||||||||    
T  33709825 taaattaagcctagcagagatgatgatgttgcgttggatgtgtggtaagactagacatgata 33709886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 18499798 - 18499854
Alignment:
Q  216 atgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 272  Q
    |||| |||||||||||||||||||||||||| || ||  ||||  ||||||||||||    
T  18499798 atgaagatgttgtgttggatgtgtgataagactagacgagatagaactaaaaatgac 18499854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 40933290 - 40933190
Alignment:
Q  179 aaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatt 278  Q
    ||||||||||| ||| | |||| |||||||||  ||||||| ||||||| |||| ||||||| |||||  | ||||||||  | || |||||| ||||||    
T  40933290 aaagaaccaacacgagagtaaaataagtgtagcgtagatgaggatgttgcgttgaatgtgtggtaagacaatacatgatagaattagaaatgaaaatatt 40933191  T
Q  279 a 279  Q
    |    
T  40933190 a 40933190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 49841503 - 49841559
Alignment:
Q  183 aaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgt 239  Q
    |||||||  |||| |||||||||||||| |||||||| |||||||||||||||||||    
T  49841503 aaccaacaagaaaataaattaagtgtagcatagatgaggatgttgtgttggatgtgt 49841559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 46367776 - 46367702
Alignment:
Q  182 gaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttgg--atgtgtgataagaataaacat 254  Q
    |||||||| ||| | |||| ||||||||||| |||||| |||||||||||||  ||||||| ||||| |||||||    
T  46367776 gaaccaacacgagaataaaataagtgtagtagagatgaggatgttgtgttggatatgtgtggtaagactaaacat 46367702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 48777568 - 48777509
Alignment:
Q  220 tgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatta 279  Q
    ||||||||||||||||||||| ||||| ||||   ||||||| ||||||||| |||||||    
T  48777568 tgatgttgtgttggatgtgtggtaagactaaaagagatatgattaaaaatgaaaatatta 48777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 25191255 - 25191361
Alignment:
Q  167 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaa 266  Q
    |||||||||| | ||||  |||| ||| | |||| ||||||||| | |||||| ||||||| | |||||| ||| ||||| || ||||||||||| |||     
T  25191255 gtgttgggctgttaagagtcaacacgagagtaaagtaagtgtagcagagatgaggatgttgcgctggatgagtggtaagactagacatgatatgattaag 25191354  T
Q  267 aatgaca 273  Q
    |||||||    
T  25191355 aatgaca 25191361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 46568005 - 46568071
Alignment:
Q  180 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 246  Q
    |||||||| | ||||  ||| |||||||||| | |||||| |||||||||||||||||||| |||||    
T  46568005 aagaaccagcacgaacataagttaagtgtagcagagatgaggatgttgtgttggatgtgtgttaaga 46568071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 29919193 - 29919253
Alignment:
Q  180 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 240  Q
    |||||||||| ||| | |||| | ||||||||  |||||| ||||||||||||||||||||    
T  29919193 aagaaccaacacgagaataaaatcagtgtagtggagatgacgatgttgtgttggatgtgtg 29919253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 29968346 - 29968406
Alignment:
Q  180 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 240  Q
    |||||||||| ||| | |||| | ||||||||  |||||| ||||||||||||||||||||    
T  29968346 aagaaccaacacgagaataaaatcagtgtagtggagatgacgatgttgtgttggatgtgtg 29968406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 42493704 - 42493631
Alignment:
Q  173 ggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 246  Q
    |||| ||||||||||||  |||| |||||||||||||| | |||||| ||||||| ||||| |||||| |||||    
T  42493704 ggctgtaaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggtaaga 42493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 39051063 - 39051155
Alignment:
Q  212 atagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatt--aaagagagttaagataacacctat 302  Q
    |||||||| ||||||||||| |||||||| |||||  | ||||||||  | || |||||||||||||  | ||||||||  ||||||||||||    
T  39051063 atagatgaggatgttgtgttagatgtgtggtaagacaagacatgatagaattagaaatgacaatattcgagagagagttgggataacacctat 39051155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 39953659 - 39953578
Alignment:
Q  178 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatat 259  Q
    |||||||||||| ||||  |||| | || |||| | ||||||  |||||| |||||||||||| ||||| ||||||||||||    
T  39953659 taaagaaccaacacgaacataaagttagcgtagcagagatgagaatgttgcgttggatgtgtggtaagattaaacatgatat 39953578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 36545058 - 36545114
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 258  Q
    ||||||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||    
T  36545058 taagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgata 36545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 9579053 - 9578986
Alignment:
Q  221 gatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagtt 288  Q
    ||||||| |||||||||||| |||||||| | ||||||  | ||||||||||||| ||| ||||||||    
T  9579053 gatgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttagagagagtt 9578986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 24583977 - 24583906
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgaca 273  Q
    ||||||||| | |||||| |||||||||  ||||| ||| ||||| |||||||||||||| ||| |||||||    
T  24583977 taagtgtagcagagatgaagatgttgtgcgggatgagtggtaagactaaacatgatatgattaagaatgaca 24583906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 23714653 - 23714559
Alignment:
Q  178 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 272  Q
    |||||||||||| ||||| |||||||||  ||| | |||| |  ||||||||||||||||||| ||||| || |||  ||| || ||||||||||    
T  23714653 taaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgac 23714559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 24102325 - 24102231
Alignment:
Q  178 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 272  Q
    |||||||||||| ||||| |||||||||  ||| | |||| |  ||||||||||||||||||| ||||| || |||  ||| || ||||||||||    
T  24102325 taaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgac 24102231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 9556737 - 9556656
Alignment:
Q  204 agtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagaga 285  Q
    ||||||||  || ||| |||||||||||||||||||| ||||| || ||  ||||||| || ||||||||| |||| |||||    
T  9556737 agtgtagtggagttgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagaga 9556656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 3865983 - 3866039
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 258  Q
    ||||||||| | |||||||||||||| |||||||| ||| ||||| || ||||||||    
T  3865983 taagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacatgata 3866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 8180691 - 8180747
Alignment:
Q  202 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 258  Q
    ||||||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||    
T  8180691 taagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgata 8180747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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