View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_28 (Length: 300)
Name: NF0542_low_28
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 158 - 300
Target Start/End: Complemental strand, 13898614 - 13898472
Alignment:
| Q |
158 |
cacagttcaattacaaggtactttaatcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccaca |
257 |
Q |
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| T |
13898614 |
cacagttcaattacaaggtactttaatcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccaca |
13898515 |
T |
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| Q |
258 |
gaaatcttgttttctcacatcatcttcctcttgaaaaatatcc |
300 |
Q |
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| T |
13898514 |
gaaatcttgttttctcacatcatcttcctcttgaaaaatatcc |
13898472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 13898750 - 13898668
Alignment:
| Q |
22 |
catcatcataccacaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaattctattct |
104 |
Q |
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| T |
13898750 |
catcatcataccacaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaattctattct |
13898668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 13886616 - 13886721
Alignment:
| Q |
184 |
tcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccacagaaatcttgttttctcacatcatctt |
283 |
Q |
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| T |
13886616 |
tcatgaccaaaactaacacttccaatttcaacctcacattttcatgctacacctccaacatggttgcagccacagaaaacttgttttctcacattctctt |
13886715 |
T |
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| Q |
284 |
cctctt |
289 |
Q |
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| T |
13886716 |
cctctt |
13886721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 1035600 - 1035534
Alignment:
| Q |
232 |
acacttcaaacatggctgcagccacagaaatcttgttttctcacatcatcttcctcttgaaaaatat |
298 |
Q |
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| T |
1035600 |
acacttcaaacatggctgcagccacagaaatcttgttttctcacatcatcttggtcttgaaaaatat |
1035534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 1035858 - 1035796
Alignment:
| Q |
34 |
acaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaat |
96 |
Q |
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| T |
1035858 |
acaaattatgtcatcacgtttatatttcctatttcaaactgaaaccaatattgtaccaagaat |
1035796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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