View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_34 (Length: 269)
Name: NF0542_low_34
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 53998483 - 53998727
Alignment:
| Q |
25 |
cagtatacacatattatccaccccaacctaatggtgggagattcaggaagacagaacaggatcagaagaatggtagacatnnnnnnnttaatgagttgtt |
124 |
Q |
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| T |
53998483 |
cagtatacacatattatccaccccaacctaatggtgggagattcaggaagacagaacaggatcagaagaatggtagacataaaaaaattaatgagttgtt |
53998582 |
T |
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| Q |
125 |
gaaatggaaaattgagatataatatttgaatatgaaagtgtcggcttcatgctaatatactgttctgctagtgcataattgtagatttattattgcccat |
224 |
Q |
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| T |
53998583 |
gaaatggaaaattgagatataatatttgaatatgaaagtgtcggcttcatgctaatatactgttctgctagtgcataattgtagatttattattgcccat |
53998682 |
T |
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| Q |
225 |
tttcgtagaaagtgtaatagatcaacaacagctatcaagcgttat |
269 |
Q |
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| T |
53998683 |
tttcgtagaaagtgtaatagaacaacaacagctaccaagcgttat |
53998727 |
T |
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