View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_36 (Length: 265)
Name: NF0542_low_36
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 47674295 - 47674094
Alignment:
| Q |
22 |
gacatcatcaagcatgcatttattaacgaatagggttaatttagtaaaactaccatgtccattagcaaatttattattatttttcttaatatttgcatag |
121 |
Q |
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| T |
47674295 |
gacatcatcaagcatgcatttattaacgaatagggttaatttagtaaaactaccatgtccattagcaaatttattattacttttcttaatatttgcatag |
47674196 |
T |
|
| Q |
122 |
caatcttaaacaactgctaatttggaatggagcaagtaggactaaaccttttaatattagaggataatccgtataaaatgaaatatagtccagcatcatt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||| |||||||||||| |
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| T |
47674195 |
caatcttaaacaactgctaatttggaatggagcaagtaggactaatcc-------------gtataatccgtataaaatgaactatattccagcatcatt |
47674109 |
T |
|
| Q |
222 |
ttctattttctgcat |
236 |
Q |
| |
|
||||||||||||||| |
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| T |
47674108 |
ttctattttctgcat |
47674094 |
T |
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