View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_38 (Length: 260)
Name: NF0542_low_38
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 40471855 - 40472076
Alignment:
| Q |
30 |
ttctattcatgattgtgttgtgtctttctcttttagttatctttttctccaccttctatttttgttgttctgtaaatgtagtccaccttatgaacacgag |
129 |
Q |
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| T |
40471855 |
ttctattcatgattgtgttgtgtctttctcttttagttatctttttctccaccttctatttttgttggtctgtaaatgtagtccaccttatgaacacgag |
40471954 |
T |
|
| Q |
130 |
ttgcttttgctgtaatttcccattttcctttgggaggtttgtaatgtgtttgtcttctaagatgtgaaccatttaacgaatccatgatcattgtacactg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
40471955 |
ttgcttttgctgtaatttcccattttcctttgggaggtttgtaatgtgtttgtcttctaaggtgtgaaccatttaacgaatctatgatcattgtacactg |
40472054 |
T |
|
| Q |
230 |
ctgcaaaaattcccttttgagg |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
40472055 |
ctgcaaaaattcccttttgagg |
40472076 |
T |
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