View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_39 (Length: 256)
Name: NF0542_low_39
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_39 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 13898268 - 13898494
Alignment:
| Q |
30 |
tgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataagg |
129 |
Q |
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| T |
13898268 |
tgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaggttggttttgagtcctttgattaaataagg |
13898367 |
T |
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| Q |
130 |
cagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtg |
229 |
Q |
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| T |
13898368 |
cagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtg |
13898467 |
T |
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| Q |
230 |
atttggatatttttcaagaggaagatg |
256 |
Q |
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| T |
13898468 |
atttggatatttttcaagaggaagatg |
13898494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 13886936 - 13886712
Alignment:
| Q |
30 |
tgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataagg |
129 |
Q |
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| T |
13886936 |
tgaaccatggccctttgaatctaaaggttccattttgatgtttaagtgtttcggttatgccttcatacatgttggttttgagtcctatcattaaggaagg |
13886837 |
T |
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| Q |
130 |
cagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtg |
229 |
Q |
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| T |
13886836 |
tagcattccaagaataggccaatttgttaggccatgatgtttcttggagtgcaaggcatgaatgattatgaagacaatggatgcaataataatttctatg |
13886737 |
T |
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| Q |
230 |
atttggatatttttcaagaggaaga |
254 |
Q |
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| T |
13886736 |
atttggatttgttgaaagaggaaga |
13886712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 1035322 - 1035546
Alignment:
| Q |
30 |
tgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataagg |
129 |
Q |
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||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1035322 |
tgaaccatgcccctctgaatctagatgttccattgtgatgcttaagaatgtcagtgatccattcatacaagtttattttgagtcctttgattaaataagg |
1035421 |
T |
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| Q |
130 |
cagcattccgaaaataggccaattgggtagg------ccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatc |
223 |
Q |
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||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1035422 |
cagcattccaaaaataggccaattggttaggccatgaccatgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatc |
1035521 |
T |
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| Q |
224 |
tcagtgatttggatatttttcaaga |
248 |
Q |
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| T |
1035522 |
tcagtgatttgaatatttttcaaga |
1035546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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