View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_41 (Length: 252)

Name: NF0542_low_41
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_41
NF0542_low_41
[»] chr7 (18 HSPs)
chr7 (1-239)||(26204351-26204589)
chr7 (1-239)||(26223989-26224226)
chr7 (1-239)||(26260338-26260576)
chr7 (5-239)||(26251318-26251552)
chr7 (1-240)||(26227438-26227677)
chr7 (5-239)||(19102990-19103224)
chr7 (5-239)||(26155658-26155892)
chr7 (1-239)||(26207877-26208115)
chr7 (8-239)||(26191738-26191969)
chr7 (5-239)||(26302279-26302513)
chr7 (5-238)||(26242870-26243103)
chr7 (5-236)||(26278169-26278397)
chr7 (6-234)||(26129038-26129266)
chr7 (8-239)||(26179556-26179787)
chr7 (5-239)||(26088252-26088486)
chr7 (5-239)||(26112040-26112274)
chr7 (5-239)||(26297918-26298152)
chr7 (148-239)||(26186862-26186952)
[»] chr4 (1 HSPs)
chr4 (1-239)||(44903719-44903957)
[»] chr5 (3 HSPs)
chr5 (65-114)||(5995044-5995093)
chr5 (54-106)||(17572660-17572712)
chr5 (54-106)||(17620000-17620052)
[»] chr8 (1 HSPs)
chr8 (51-220)||(16908691-16908863)
[»] chr1 (1 HSPs)
chr1 (51-108)||(14869802-14869859)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26204351 - 26204589
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||    
T  26204351 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgg 26204450  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204451 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 26204550  T
Q  201 gggccccacagcttctgatattggatcaccctgcaacag 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26204551 gggccccacagcttctgatattggatcaccctgcaacag 26204589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26223989 - 26224226
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||    
T  26223989 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgg 26224088  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26224089 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgataga-tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 26224187  T
Q  201 gggccccacagcttctgatattggatcaccctgcaacag 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26224188 gggccccacagcttctgatattggatcaccctgcaacag 26224226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26260338 - 26260576
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    ||||||||||||||||||||||||| | |||||||||||| |||  ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26260338 tgtgttgtatgtaagttttggaagcttgactaggctttcttatgctcaggttgttgaaatagctcatggacttgaaaattcaggtcataatttcatttgg 26260437  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 200  Q
    ||||||||  |||| ||   ||  || |   ||||  |||||||    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26260438 gttgttaggaaaaaagacggaggcgaagtcaaagacagttttcttcatgattttgagcaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 26260537  T
Q  201 gggccccacagcttctgatattggatcaccctgcaacag 239  Q
    |||| |||||||| || ||||||||||||||||||||||    
T  26260538 gggcaccacagctccttatattggatcaccctgcaacag 26260576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26251318 - 26251552
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||| |||| ||| | || ||||| ||||||||||||||||||||||| || ||||||     
T  26251318 ttgtatgtaagttttggcagccttactaggcttcctcatgctcagcttgtagaaattgcacatgggcttgaaaattcaggtcataattttatctgggtta 26251417  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | | | || | ||||||||||| | || |||||||||| ||  | | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  26251418 taaaaaaagatgataaagatgaggatggagaaggttttttgcaaaaatttgaggaaaggatgaaagaaagcaacaagggctatatcatctggaattgggc 26251517  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     ||||| ||||||||||||||||||||||||||||    
T  26251518 accacaacttctgatattggatcaccctgcaacag 26251552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26227438 - 26227677
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    ||||||||||||||||||||||||| | || || || ||||||   |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  26227438 tgtgttgtatgtaagttttggaagcttgacaagactctctcattcccagattgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgg 26227537  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttc-tgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaat 199  Q
    ||||||||  |||| |||  ||| |  |  ||||| || |||| |||| |||||| || ||||||||||||||| ||||||||| |||||||||||||||    
T  26227538 gttgttaggaaaaaagatggagaaggagacgaagacgggtttcttgat-gattttaagcaaaggatgaaagaaaacaaaaagggatatatcatatggaat 26227636  T
Q  200 tgggccccacagcttctgatattggatcaccctgcaacagc 240  Q
    ||||| ||||| ||||| ||||| | |||||||||||||||    
T  26227637 tgggcaccacaacttctcatattaggtcaccctgcaacagc 26227677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 19103224 - 19102990
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    |||||||||||||||||||| || |||||||||    |||| |||||||| ||| | || || || ||||||||||||||||||||||| || |||||||    
T  19103224 ttgtatgtaagttttggaagtctaactaggcttgaaaatgatcagattgtagaaatcgcacacggtcttgaaaattcaggtcataattttatctgggttg 19103125  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | ||  |||| || | ||||||  ||||| |  |||||||   ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  19103124 taaggaaaaatgagagagatgagagtgaaaacagttttctacaagattttgaggcaaggatgaaagaaagcaaaaagggatatatcatatggaattgggc 19103025  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     || || ||||||||||||||||||||||||||||    
T  19103024 accgcaacttctgatattggatcaccctgcaacag 19102990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26155658 - 26155892
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    |||||||||||||||||||| || |||||||||  | |||  |||||||| ||| | || || || || |||||||||||||||||||| || |||||||    
T  26155658 ttgtatgtaagttttggaagtctaactaggcttgataatgctcagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctgggttg 26155757  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | ||  ||||||| |  |||||  ||||| |   ||| ||   |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26155758 taaggaaaaaggagagcgatgagagtgaaaacactttccttcaagattttgaggaaaggatgaaagaaagcaaaaagggatatatcatatggaattgggc 26155857  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     ||||||||||||||||||||||||||||||||||    
T  26155858 accacagcttctgatattggatcaccctgcaacag 26155892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26207877 - 26208115
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    |||||||||  |||||||||||||| | || || ||  ||||||  |||||||| ||| |||||||||| || |||||||| ||||||||||||||||||    
T  26207877 tgtgttgtacataagttttggaagcttgacaagactccctcatgctcagattgtagaaatagctcatggtctggaaaattccggtcataatttcatttgg 26207976  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 200  Q
    ||||||||  |||| |||  ||| |  |||||||| ||||||||   ||||||| || ||||||||||||||| ||||||||| ||||||||||||||||    
T  26207977 gttgttaggaaaaaagatggagaaggaggtgaagatggttttcttgaagattttaagcaaaggatgaaagaaaacaaaaagggatatatcatatggaatt 26208076  T
Q  201 gggccccacagcttctgatattggatcaccctgcaacag 239  Q
    |||| ||||||||||| ||||| |  |||||||||||||    
T  26208077 gggcaccacagcttctcatattaggccaccctgcaacag 26208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 26191738 - 26191969
Alignment:
Q  8 tatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtta 107  Q
    |||||||| ||||||||  | ||||||||  ||||||  ||| |||| ||| | || ||||| ||||||||||||||||||||||| || |||||||| |    
T  26191738 tatgtaagctttggaagtttaactaggctaactcatgctcagcttgtagaaattgcacatgggcttgaaaattcaggtcataattttatctgggttgtaa 26191837  T
Q  108 gagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcccc 207  Q
    |  |||| ||||  |||||  ||||| |  |||| ||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26191838 ggaaaaatgatatggatgagagtgaaaacagtttcctacaagattttgagggaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcacc 26191937  T
Q  208 acagcttctgatattggatcaccctgcaacag 239  Q
    |||||||| |||||||||||||||||||||||    
T  26191938 acagcttcagatattggatcaccctgcaacag 26191969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26302279 - 26302513
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    ||||||||||||||||| ||||||  | ||| | ||||||  ||| |||| ||| | || || || ||||||||||||||||||| ||| |||||||| |    
T  26302279 ttgtatgtaagttttggcagccttgtttggcatcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcg 26302378  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    |  || || | |||| | |||| | |||||||||||| |||  ||  |||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  26302379 tacgaaaatatgatagaaatgaggatgaagaaggtttcctgcaagtatttgaggaaaggatgaaagaaagcaaaaaaggctatatcatatggaattgggc 26302478  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     || |||||||| ||||||||||||||||||||||    
T  26302479 accgcagcttctaatattggatcaccctgcaacag 26302513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 26242870 - 26243103
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    ||||||||||||||||| ||||  |||||| || ||||||  ||| |||| ||| | ||||| || ||||||||||||||||||||||| || ||||||     
T  26242870 ttgtatgtaagttttggcagccagactaggtttcctcatgctcagcttgtagaaattgctcacgggcttgaaaattcaggtcataattttatctgggtta 26242969  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | | | || | ||||||| ||| | || ||||||||| |||  ||| |||||| ||||||||||||||||||| |||||||||||||||||| | |||||    
T  26242970 taaaaaaagatgataaagttgaggatggagaaggtttcctgcaagaatttgaggaaaggatgaaagaaagcaacaagggctatatcatatgggactgggc 26243069  T
Q  205 cccacagcttctgatattggatcaccctgcaaca 238  Q
     || || |||||||||||||||||||| ||||||    
T  26243070 accgcaacttctgatattggatcacccagcaaca 26243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 26278169 - 26278397
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    ||||||||||| ||||| ||||||| ||||||| ||||||  ||| |||| ||| | || || || ||||||||||||||||||||||| || ||||||     
T  26278169 ttgtatgtaagctttggcagccttattaggcttcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcataattttatctgggtta 26278268  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | |   ||||  |||||||||| | || ||||||||| |||  ||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  26278269 taa---aaaataataaagatgaggatggagaaggtttcctgcaagaatttgagaaaaggatgaaagaaagcaacaagggctacatcatatgggattgggc 26278365  T
Q  205 cccacagcttctgatattggatcaccctgcaa 236  Q
     ||||| || |||||||||||  |||||||||    
T  26278366 accacaactgctgatattggaataccctgcaa 26278397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 26129038 - 26129266
Alignment:
Q  6 tgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgt 105  Q
    ||||||||||||||||||| || |||||||||  | |||  |||||||| ||| | || || || || |||||||||||||||||||| || ||||||||    
T  26129038 tgtatgtaagttttggaagtctaactaggcttgataatgctcagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatatgggttgt 26129137  T
Q  106 tagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcc 205  Q
     ||  ||||||| |  |||||  ||||| |   ||| ||   |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||     
T  26129138 aaggaaaaaggagagcgatgagagtgaaaacaatttccttcaagattttgaggaaaggatgaaagaaagaaaaaagggctatatcatatggaattgggca 26129237  T
Q  206 ccacagcttctgatattggatcaccctgc 234  Q
    |||||||| || |||||||||||||||||    
T  26129238 ccacagctccttatattggatcaccctgc 26129266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 26179556 - 26179787
Alignment:
Q  8 tatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtta 107  Q
    |||||||||||||| ||||||  |||| || | ||||  ||| |||| ||| | || || || |||||||| |||||||| ||||| || |||||| | |    
T  26179556 tatgtaagttttggtagccttgttaggtttccgcatgctcagcttgtagaaattgcgcacgggcttgaaaactcaggtcaaaattttatctgggttataa 26179655  T
Q  108 gagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcccc 207  Q
     | || | ||||||||||| | || ||||||||| |||  ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |    
T  26179656 aaaaatatgataaagatgaagatggagaaggtttcctgcaagaatttgaggaaaggttgaaagaaagcaaaaagggctatatcatatggaattgggcatc 26179755  T
Q  208 acagcttctgatattggatcaccctgcaacag 239  Q
    ||| ||||||||||| ||||||||||||||||    
T  26179756 acaacttctgatattagatcaccctgcaacag 26179787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26088252 - 26088486
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    |||||||||||||||||||| || | |||||||  | |||  |||||||| ||| | || || || || |||||||||||||||||||| || |||||||    
T  26088252 ttgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctgggttg 26088351  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | ||  || | || |  |||||  ||||| |   ||| ||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26088352 taaggaaatatgagagggatgagagtgaaaacactttccttcaagattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 26088451  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     ||||| ||||||||||||||||| ||||||||||    
T  26088452 accacaacttctgatattggatcatcctgcaacag 26088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26112040 - 26112274
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    |||||||||||||||||||| || | |||||||  | |||  |||||||| ||| | || || || || |||||||||||||||||||| || |||||||    
T  26112040 ttgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctgggttg 26112139  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | ||  || | || |  |||||  ||||| |   ||| ||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26112140 taaggaaatatgagagggatgagagtgaaaacactttccttcaagattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 26112239  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     ||||| ||||||||||||||||| ||||||||||    
T  26112240 accacaacttctgatattggatcatcctgcaacag 26112274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26297918 - 26298152
Alignment:
Q  5 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 104  Q
    ||||||||||||||||| ||| ||||||||||| || |||  ||| |||| ||| | | |||||| ||||||||||||||||||||||| || ||||||     
T  26297918 ttgtatgtaagttttggcagctttactaggcttccttatgctcagcttgtagaaattgttcatgggcttgaaaattcaggtcataattttatctgggtta 26298017  T
Q  105 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggc 204  Q
    | | |    | |||| |||||| | || |||||||||||||  ||| |||||| ||||||| ||||||||||  |||||||||||||||||| | |||||    
T  26298018 taaaaagggatgatacagatgaggatggagaaggttttctgcaagaatttgaggaaaggattaaagaaagcagcaagggctatatcatatgggactgggc 26298117  T
Q  205 cccacagcttctgatattggatcaccctgcaacag 239  Q
     || || |||||||||||||| |||||||||||||    
T  26298118 accgcaacttctgatattggaccaccctgcaacag 26298152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 26186862 - 26186952
Alignment:
Q  148 agattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgatattggatcaccctgcaacag 239  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26186862 agattttgagaaa-gaatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacag 26186952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44903719 - 44903957
Alignment:
Q  1 tgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgg 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||  ||| |||| ||| | || ||||| |||||||| |||||||||||||| || |||    
T  44903719 tgtgttgtatgtaagttttggaagccttactaagctttttcatgctcagcttgtagaaattgcacatgggcttgaaaagtcaggtcataattttatctgg 44903818  T
Q  101 gttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaatt 200  Q
    ||||| ||  |||| |||| ||| ||    || |||||||| |||  |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  44903819 gttgtaaggaaaaatgatagagacgagaacgaggaaggtttcctgcaagattttgaggaaagggtgaaagaaagcaacaagggctatatcatatggaatt 44903918  T
Q  201 gggccccacagcttctgatattggatcaccctgcaacag 239  Q
    |||| || |||||||| ||||||||||||||||||||||    
T  44903919 gggcaccgcagcttctcatattggatcaccctgcaacag 44903957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 5995093 - 5995044
Alignment:
Q  65 catggacttgaaaattcaggtcataatttcatttgggttgttagagaaaa 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  5995093 catgcacttgaaaattcaggtcataatttcatttgggttgttagaaaaaa 5995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 17572712 - 17572660
Alignment:
Q  54 ttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtt 106  Q
    ||||| ||||||||| |||||||| |||| | ||| |||||||||||||||||    
T  17572712 ttgaaatagctcatgcacttgaaacttcaagccatgatttcatttgggttgtt 17572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 17620000 - 17620052
Alignment:
Q  54 ttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtt 106  Q
    ||||| ||||||||| |||||||  |||| | |||||||||||||||||||||    
T  17620000 ttgaaatagctcatgcacttgaagcttcaagccataatttcatttgggttgtt 17620052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 16908863 - 16908691
Alignment:
Q  51 ttgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaa---aggataaagatgatggtgaagaaggttttctgat 147  Q
    |||||||| ||||||||| ||||||| |||| || ||| |||||||||||||||||||  |||   | |||   || || ||||| || |||||| |||     
T  16908863 ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaggaaaatcgaagatgccgaagacggtgatgatggttttttgag 16908764  T
Q  148 agattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgata 220  Q
     || |||||||| || ||||||||||| || || |||||| | ||||||  |||||| |||||||||||||||    
T  16908763 tgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgata 16908691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 14869802 - 14869859
Alignment:
Q  51 ttgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttag 108  Q
    |||||||| ||||||||| ||||||| |||| || ||| |||||||||||||||||||    
T  14869802 ttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttag 14869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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