View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_43 (Length: 251)

Name: NF0542_low_43
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_43
NF0542_low_43
[»] chr4 (17 HSPs)
chr4 (1-165)||(13768551-13768715)
chr4 (1-165)||(43892751-43892915)
chr4 (1-159)||(46721892-46722050)
chr4 (1-98)||(32824561-32824658)
chr4 (170-242)||(32824234-32824299)
chr4 (1-59)||(39606297-39606355)
chr4 (1-59)||(27512945-27513003)
chr4 (1-59)||(32595098-32595156)
chr4 (1-36)||(4608146-4608181)
chr4 (1-59)||(21733903-21733961)
chr4 (1-44)||(20618779-20618822)
chr4 (1-59)||(18502018-18502076)
chr4 (1-59)||(23237517-23237575)
chr4 (1-29)||(18493822-18493850)
chr4 (11-59)||(20167542-20167590)
chr4 (1-29)||(22375927-22375955)
chr4 (1-29)||(54508600-54508628)
[»] chr7 (18 HSPs)
chr7 (1-165)||(83846-84010)
chr7 (1-165)||(48609334-48609498)
chr7 (7-165)||(46211905-46212063)
chr7 (1-157)||(45809876-45810032)
chr7 (11-165)||(39719643-39719797)
chr7 (1-165)||(758594-758747)
chr7 (7-102)||(2826776-2826871)
chr7 (164-242)||(305057-305128)
chr7 (164-242)||(2828989-2829060)
chr7 (1-58)||(11468623-11468680)
chr7 (1-59)||(27098888-27098946)
chr7 (1-59)||(27179357-27179415)
chr7 (2-44)||(36558371-36558413)
chr7 (1-58)||(5437147-5437204)
chr7 (1-59)||(23333304-23333362)
chr7 (1-59)||(33036083-33036141)
chr7 (1-59)||(27571602-27571660)
chr7 (1-29)||(41532434-41532462)
[»] chr6 (9 HSPs)
chr6 (1-165)||(29363773-29363937)
chr6 (1-165)||(34729528-34729692)
chr6 (1-163)||(3886163-3886325)
chr6 (1-163)||(583189-583351)
chr6 (1-77)||(30386778-30386854)
chr6 (164-242)||(30385859-30385930)
chr6 (1-59)||(13703097-13703155)
chr6 (1-59)||(7590495-7590553)
chr6 (2-59)||(5122289-5122346)
[»] chr3 (13 HSPs)
chr3 (1-165)||(17653216-17653380)
chr3 (1-165)||(46823557-46823721)
chr3 (16-165)||(21295699-21295849)
chr3 (1-163)||(30342686-30342848)
chr3 (5-159)||(40285661-40285816)
chr3 (2-152)||(35734322-35734469)
chr3 (1-44)||(35238724-35238767)
chr3 (1-59)||(22775260-22775318)
chr3 (1-59)||(37057547-37057605)
chr3 (1-59)||(37224413-37224471)
chr3 (63-99)||(35734270-35734306)
chr3 (1-36)||(26769844-26769879)
chr3 (1-44)||(30500937-30500980)
[»] scaffold0049 (2 HSPs)
scaffold0049 (1-165)||(15025-15189)
scaffold0049 (1-163)||(46897-47059)
[»] chr5 (9 HSPs)
chr5 (1-165)||(17769205-17769369)
chr5 (7-165)||(39685558-39685715)
chr5 (5-119)||(13517269-13517383)
chr5 (1-59)||(39570854-39570912)
chr5 (1-152)||(8403328-8403479)
chr5 (1-59)||(42580455-42580513)
chr5 (135-165)||(13517385-13517415)
chr5 (1-58)||(21360927-21360984)
chr5 (1-53)||(6735934-6735986)
[»] chr8 (6 HSPs)
chr8 (1-165)||(21441822-21441986)
chr8 (1-165)||(41323410-41323574)
chr8 (1-165)||(4072456-4072620)
chr8 (1-163)||(18606041-18606203)
chr8 (122-163)||(2811316-2811357)
chr8 (1-58)||(10713874-10713931)
[»] chr1 (14 HSPs)
chr1 (1-165)||(10619816-10619980)
chr1 (1-165)||(15757429-15757593)
chr1 (9-157)||(7493428-7493576)
chr1 (16-156)||(48770403-48770542)
chr1 (1-95)||(44429776-44429870)
chr1 (14-159)||(33409802-33409948)
chr1 (1-59)||(44592610-44592668)
chr1 (1-57)||(36156955-36157011)
chr1 (1-58)||(29681101-29681158)
chr1 (1-59)||(27773576-27773634)
chr1 (1-37)||(39618458-39618494)
chr1 (1-59)||(6764509-6764567)
chr1 (1-59)||(43022572-43022630)
chr1 (1-58)||(48366676-48366733)
[»] chr2 (16 HSPs)
chr2 (1-165)||(5382553-5382721)
chr2 (16-152)||(7494759-7494895)
chr2 (1-163)||(10585123-10585285)
chr2 (2-163)||(36314444-36314606)
chr2 (2-163)||(1592961-1593122)
chr2 (1-95)||(1043292-1043386)
chr2 (1-95)||(9190281-9190375)
chr2 (38-158)||(22333390-22333510)
chr2 (24-152)||(12563719-12563847)
chr2 (7-152)||(10412696-10412838)
chr2 (1-59)||(41732611-41732669)
chr2 (1-59)||(2096125-2096183)
chr2 (1-59)||(21278635-21278693)
chr2 (26-159)||(19590798-19590932)
chr2 (1-37)||(14160588-14160624)
chr2 (1-29)||(21613392-21613420)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 13768551 - 13768715
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13768551 ctacccctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttg 13768650  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13768651 ataatgtcgtataggaaccgaaagattaacacccaaaagagataaataataaataataacaatat 13768715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 43892915 - 43892751
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| ||| || ||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  43892915 ctacccctaataatatatatttagctgccccaagtttaattttagatgaaataattttttctatctttatttaacttccgatcgaacttcaaattatttg 43892816  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  43892815 ataatgttgtataagaatcgaaagattaacatccaaaagagataaataataaataataacaatat 43892751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 46721892 - 46722050
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||| || | ||||||||||| ||| |||||||||||||||||||||     
T  46721892 ctacccctaataatatatatttagctaccccaaattttattttaagtgaaataattctttccatctttatttagctttcggtcgaacttcaaattattta 46721991  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataa 159  Q
    || ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  46721992 atcatgtcgtataggaaccggaagaataacacccaaaagagataaataataaataataa 46722050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32824658 - 32824561
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatt 98  Q
    ||||||||| ||||| ||||||||||| | ||| ||| |||||||||||||||||||||   || |||||||||||||||||||||||||||||||||    
T  32824658 ctacccctagtaataaatatttggctatcccaaattttattttaagtgaaataatttttttcatttttatttaacttccggtcgaacttcaaattatt 32824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 32824299 - 32824234
Alignment:
Q  170 tcatcatttgaatttattttcatactacactttacacttgatgtttaagatcatgggaatcactaatattctt 242  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  32824299 tcatcatttgaatttattttcatactacactt-------gatgtttaagatcatgggaatcactaatattctt 32824234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39606355 - 39606297
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||    
T  39606355 ctacccctaataatatatatttggctacctcaagttcgattttaggtgcaataattttt 39606297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27512945 - 27513003
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||| ||||||||||    
T  27512945 ctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataattttt 27513003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32595156 - 32595098
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||| ||||||||||    
T  32595156 ctacccctaataatatatatttggctaccccaagttcgattttaggtgcaataattttt 32595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4608146 - 4608181
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  4608146 ctacccctaataatatatatttggctacctcaagtt 4608181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21733903 - 21733961
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||| ||| ||||| ||||    
T  21733903 ctacccctaataatatatagttggctaccccaagtttgattttaggtggaataactttt 21733961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20618779 - 20618822
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaatttta 44  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||    
T  20618779 ctacccctaataatatatgtttggctaccccaaatttaatttta 20618822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18502018 - 18502076
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||| ||||||||||||||||||||  |||||  |||||| ||| ||||||||||    
T  18502018 ctacccctgataatatatatttggctaccctaagttcgattttaggtgtaataattttt 18502076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23237575 - 23237517
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||||||||||||||||||||| || ||||||  ||||||  || ||||||||||    
T  23237575 ctacccctaataatatatatttggctgccccaagttcgattttagatgtaataattttt 23237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18493850 - 18493822
Alignment:
Q  1 ctacccctaataatatatatttggctacc 29  Q
    |||||||||||||||||||||||||||||    
T  18493850 ctacccctaataatatatatttggctacc 18493822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 20167542 - 20167590
Alignment:
Q  11 taatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||| ||||||| |||||| ||  ||||||||||    
T  20167542 taatatatatttggctaccccaagtttgattttaggtagaataattttt 20167590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22375955 - 22375927
Alignment:
Q  1 ctacccctaataatatatatttggctacc 29  Q
    |||||||||||||||||||||||||||||    
T  22375955 ctacccctaataatatatatttggctacc 22375927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54508628 - 54508600
Alignment:
Q  1 ctacccctaataatatatatttggctacc 29  Q
    |||||||||||||||||||||||||||||    
T  54508628 ctacccctaataatatatatttggctacc 54508600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 84010 - 83846
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| | |||| ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  84010 ctacccctaataatatatatttagttaccccaaatttaattttaagtgaaataaatttttctatctttatttaacttccggtcgaacttcaaattatttg 83911  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  83910 ataatgtcgtataggaaccgaaagattaacacccaaaagagataaataataaataataacaatat 83846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 48609498 - 48609334
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  48609498 ctacccctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcggtcgaacttcaaattatttg 48609399  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  48609398 ataatgtcgtataggaaccgaaagattaataccaaaaagagataaataataaataataacaatat 48609334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 46212063 - 46211905
Alignment:
Q  7 ctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatg 106  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  46212063 ctaataatatatatttagctaccccaaatttaattttaagtgaaataattttttctttctttatttaacttccggtcgaacttcaaattatttgataatg 46211964  T
Q  107 tcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46211963 tcgtataggaaccgaaagattaacacccaaaagagataaataataaataataacaatat 46211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 45810032 - 45809876
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||     
T  45810032 ctacccccaataatatatatttggctaccccaagttttattttaagtgaaataattttttccatctttatttagcttccggtcgaacttcaaattattta 45809933  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataat 157  Q
    || ||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  45809932 atcatgtcgtataggaaccggaagactaacacccaaaagagataaataataaataat 45809876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 39719643 - 39719797
Alignment:
Q  11 taatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgt 110  Q
    |||||||||||| |||| | || |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  39719643 taatatatatttagctatcccaggtttaattttagatgaaataattttttctatctttatttaactttcggtcgaactttaaattatttgataatgttgt 39719742  T
Q  111 ataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  39719743 ataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 39719797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 758594 - 758747
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||           ||| ||||||||||||||||||||||    
T  758594 ctacccttaataatatatatttagctaccccaaatttaattttaagtgaaataattttttcta-----------ctttcggtcgaacttcaaattatttg 758682  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  758683 ataatgtcatataggaaccgaaagattaacacccaaaagagataaataataaataataacaatat 758747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 2826776 - 2826871
Alignment:
Q  7 ctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgat 102  Q
    |||||||||||||||| |||||  ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||| || |||||||||||||||    
T  2826776 ctaataatatatatttagctactccaagtttaattgtaagtgaaataattttttctatctttaattaccttccggtcaaaattcaaattatttgat 2826871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 305128 - 305057
Alignment:
Q  164 atgctatcatcatttgaatttattttcatactacactttacacttgatgtttaagatcatgggaatcactaatattctt 242  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  305128 atgctatcatcatttgaatttattttcatactacactt-------gatgtttaagatcatgggaatcactaatattctt 305057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 2828989 - 2829060
Alignment:
Q  164 atgctatcatcatttgaatttattttcatactacactttacacttgatgtttaagatcatgggaatcactaatattctt 242  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  2828989 atgctatcatcatttgaatttattttcatactaca-------cttgatgtttaagatcatgggaatcactaatattctt 2829060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11468623 - 11468680
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  11468623 ctacctctaataatatatatttggctacctcaagtttgattttagttgaaataatttt 11468680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27098946 - 27098888
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||| || ||||||||||    
T  27098946 ctacccctaataatatatatttggctatcccaaatttaattttaaatgtaataattttt 27098888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27179357 - 27179415
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||| || ||||||||||    
T  27179357 ctacccctaataatatatatttggctatcccaaatttaattttaaatgtaataattttt 27179415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 36558371 - 36558413
Alignment:
Q  2 tacccctaataatatatatttggctacctcaagtttaatttta 44  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  36558371 tacccctaataatatatatttggctacctcaagtttgatttta 36558413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5437204 - 5437147
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  5437204 ctacccctgataatatatatttggctaccccaagtttgattttagttgaaataatttt 5437147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23333362 - 23333304
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||  ||||||  |||||| ||| ||||||||||    
T  23333362 ctacccctaataatatatatttggctactccaagttcgattttaggtgcaataattttt 23333304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33036141 - 33036083
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||| |||||||||||||||||||| ||||||  |||||| ||| ||||||||||    
T  33036141 ctacccctgataatatatatttggctaccccaagttcgattttaggtgtaataattttt 33036083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27571660 - 27571602
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||||||||||||||||||||||||  | |||  |||||| ||| ||||||||||    
T  27571660 ctacccctaataatatatatttggctaccctatgttcgattttaggtgtaataattttt 27571602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41532434 - 41532462
Alignment:
Q  1 ctacccctaataatatatatttggctacc 29  Q
    |||||||||||||||||||||||||||||    
T  41532434 ctacccctaataatatatatttggctacc 41532462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29363937 - 29363773
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29363937 ctactcctaataatatatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttg 29363838  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29363837 ataatgttgtataggaaccgaaagattaacacccaaaagagataaataataaataataacaatat 29363773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 34729528 - 34729692
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  34729528 ctacccctaatagtatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcgatcgaacttcaaattatttg 34729627  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  34729628 ataatatcgtataggaaccgaaagattaataccaaaaagagataaataataaataataacaatat 34729692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3886163 - 3886325
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||      
T  3886163 ctacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttccatctttatttaacttccggtcaaactttaaattattca 3886262  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || |||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  3886263 atcatgtcgtacaggatccgaaagaataacacccaaaagagataaataataaataataacaat 3886325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 583351 - 583189
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||      
T  583351 ctacccctaataatatatatttggttaccccaagttttattttaaatgaaataattttttccatctttatttaacttccggtcaaactttaaattattca 583252  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || ||||| || || | || ||||| ||||||||||||||||||||||| |||||||||||||    
T  583251 atcatgtcctacagaatccgaaagaataacacccaaaagagataaataagaaataataacaat 583189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30386854 - 30386778
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaactt 77  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30386854 ctacccctaataatatatatttagctatctcaagtttaattttaagtgaaatatttttttctatctttatttaactt 30386778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 30385930 - 30385859
Alignment:
Q  164 atgctatcatcatttgaatttattttcatactacactttacacttgatgtttaagatcatgggaatcactaatattctt 242  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  30385930 atgctatcatcatttgaatttattttcatactacactt-------gatgtttaagatcatgggaatcactaatattctt 30385859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13703097 - 13703155
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  13703097 ctacccctaataatatatatttagctacctcaagtttaattttagatgaaataattttt 13703155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7590553 - 7590495
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||  || ||||||||||    
T  7590553 ctacccctaataatatatatttggctaccccaagttcgattttagatgtaataattttt 7590495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 5122346 - 5122289
Alignment:
Q  2 tacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||| |||| ||||| ||||||  |||||| ||||||||| ||||    
T  5122346 tacccctaataatatatttttgactaccccaagttcgattttatgtgaaataaatttt 5122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17653380 - 17653216
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  17653380 ctacccctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcggtcgaacttcaaattatttg 17653281  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  17653280 ataatgtcgtataggaaccgaaagattaataccaaaaagagataaataataaataataacaatat 17653216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 46823557 - 46823721
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||| || |||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46823557 ctacccctaataatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttg 46823656  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  46823657 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 46823721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 21295699 - 21295849
Alignment:
Q  16 tatatttggctacctcaagtttaattttaagtgaaataatttttactatcttt-atttaacttccggtcgaacttcaaattatttgataatgtcgtatag 114  Q
    ||||||| |||||| ||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||     
T  21295699 tatatttagctaccccaaatttaattttagatgaaataattttttctatcttttatttaacttccggtcgaacttcaaattatttgataatgttgtataa 21295798  T
Q  115 gaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  21295799 gaatcgaaagattaacacctaaaagagataaataataaataataacaatat 21295849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 30342686 - 30342848
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||| |||||||||||||||| |||||| ||| ||| |||||||||||||||||| || | ||||||||||| ||| |||||||||||||||||||||     
T  30342686 ctacctctaataatatatatttagctaccccaaattttattttaagtgaaataattctttccatctttatttagctttcggtcgaacttcaaattattta 30342785  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || |||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||    
T  30342786 atcatgtcgtataggaatcggaagaataacacccaaaagagataaataataaataataacaat 30342848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 40285661 - 40285816
Alignment:
Q  5 ccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttta-ctatctttatttaacttccggtcgaacttcaaattatttgata 103  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||  | ||| ||||||| ||| ||||||||||||||||||||| ||     
T  40285661 ccctaataatatatatttagctatctcaagtttgattttaagtgaaatattttttttcaatcattatttagctttcggtcgaacttcaaattatttaatc 40285760  T
Q  104 atgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataa 159  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  40285761 atgtcatataggaaccggaagattaacacccaaaaaagataaataataaataataa 40285816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 35734469 - 35734322
Alignment:
Q  2 tacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttact-atctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||| ||||||||| ||||| ||||||  || ||| |||||||||||||||||||||  | |||| |||||| ||||||  ||||||| |||||||||     
T  35734469 tacccttaataatatgtatttagctaccctaaattttattttaagtgaaataattttttttcatctatatttagcttccg--cgaacttgaaattattta 35734372  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataa 152  Q
    | | | || ||||||||||  ||||||||||||||||  |||||||||||||    
T  35734371 acattatcatataggaaccggaagattaacacccaaa--agataaataataa 35734322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35238767 - 35238724
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaatttta 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  35238767 ctacccctaataatatatatttggctaccccaagtttaatttta 35238724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22775318 - 22775260
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||| ||||||||||    
T  22775318 ctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataattttt 22775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37057547 - 37057605
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||| ||||| ||||    
T  37057547 ctacccctaataatatatatttggctaccccaagttcgattttaggtgcaataactttt 37057605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37224413 - 37224471
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||| | ||||||  |||||| ||| ||||||||||    
T  37224413 ctacccctaataatatatatttggctatcccaagttcgattttaggtgtaataattttt 37224471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 35734306 - 35734270
Alignment:
Q  63 atctttatttaacttccggtcgaacttcaaattattt 99  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35734306 atctttatttagcttccggtcgaacttcaaattattt 35734270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26769879 - 26769844
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtt 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26769879 ctacccctaataatatatatttggctaccccaagtt 26769844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30500980 - 30500937
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaatttta 44  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||    
T  30500980 ctacccctaataatatatatctggctaccccaagtttgatttta 30500937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 15025 - 15189
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  15025 ctacccctaataatatatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttttaattatttg 15124  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  15125 ataatgtcgtataggaaccgaaagattaacacccgaaagagataaataataaataataacaatat 15189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 46897 - 47059
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||      
T  46897 ctacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttccatctttatttaacttccggtcaaactttaaattattca 46996  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || |||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  46997 atcatgtcgtacaggatccgaaagaataacacccaaaagagataaataataaataataacaat 47059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17769369 - 17769205
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17769369 ctacccctaataatatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttg 17769270  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  17769269 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 17769205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 39685715 - 39685558
Alignment:
Q  7 ctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatg 106  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||    
T  39685715 ctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatttttatttaacttccgatcgaacttcaaa-tatttgataatg 39685617  T
Q  107 tcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  39685616 tcgtataggaaccgaaagattaacaccaaaaaaagataaataataaataataacaatat 39685558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 13517269 - 13517383
Alignment:
Q  5 ccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataa 104  Q
    ||||||||||||||||||  ||||| ||||||||||||||  |||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||    
T  13517269 ccctaataatatatatttaactaccccaagtttaattttagatgaaataattttttttatctttatttaactttcggtcgaaattcaaattatttgataa 13517368  T
Q  105 tgtcgtataggaacc 119  Q
    ||| ||||| |||||    
T  13517369 tgttgtataagaacc 13517383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39570854 - 39570912
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||| ||||||||||    
T  39570854 ctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataattttt 39570912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 8403328 - 8403479
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataat-ttttactatctttatttaacttccggtcgaacttcaaattattt 99  Q
    ||||| ||||||||||  |||| ||||||| || ||| |||||||||| |||||| |||| | ||| |||||||  || | || ||||||||||||||||    
T  8403328 ctacctctaataatatgcatttagctaccttaaattttattttaagtggaataatctttttccatccttatttagttttcagttgaacttcaaattattt 8403427  T
Q  100 gataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataa 152  Q
    ||   ||||||||||| |||  | |||||||||| |||| | |||||||||||    
T  8403428 gaacgtgtcgtatagg-accggaggattaacacctaaaacaaataaataataa 8403479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42580455 - 42580513
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||| |||||||||||||||||||| | ||| ||| |||||| ||||||||||||||    
T  42580455 ctacccttaataatatatatttggctatcccaattttgattttaggtgaaataattttt 42580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 13517385 - 13517415
Alignment:
Q  135 aaaagagataaataataaataataacaatat 165  Q
    |||||||||||||||||||||||||||||||    
T  13517385 aaaagagataaataataaataataacaatat 13517415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21360927 - 21360984
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    ||||||||||||||||||||||||||||| || |||  ||||||  | ||||||||||    
T  21360927 ctacccctaataatatatatttggctaccccatgttcgattttagtttaaataatttt 21360984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6735934 - 6735986
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaata 53  Q
    ||||| ||||||||||||||||||||||| ||||||  |||||| ||| ||||    
T  6735934 ctacctctaataatatatatttggctaccccaagttcgattttaggtgcaata 6735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21441986 - 21441822
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21441986 ctacccctaataatatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttg 21441887  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  21441886 ataatgttgtataagaatcgaaagattaacatccaaaagagataaataataaataataacaatat 21441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 41323574 - 41323410
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||| || |||||| ||||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  41323574 ctacccctaataatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaatttccggtcgaacttcaaattatttg 41323475  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  41323474 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 41323410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4072620 - 4072456
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||| || |||||| ||||||||||||||  ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  4072620 ctacccctaataatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttacggtagaacttcaaattatttg 4072521  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  4072520 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 4072456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 18606041 - 18606203
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||      
T  18606041 ctacccctaataatatatatttggctaccccaagttttattttaagtgaaataattttttccatctttatttaacttccggtcaaactttaaattattca 18606140  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || |||||||| | || || ||||| |||||||||||||||||||||||||||||||||||||    
T  18606141 atcatgtcgtacatgatccgaaagaataacacccaaaagagataaataataaataataacaat 18606203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 2811316 - 2811357
Alignment:
Q  122 aagattaacacccaaaagagataaataataaataataacaat 163  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  2811316 aagaataacacccaaaagagataaataataaataataacaat 2811357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10713874 - 10713931
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    |||||||| |||||||| ||||||||||| |||||||||||||| ||||||| |||||    
T  10713874 ctaccccttataatatacatttggctaccccaagtttaattttaggtgaaattatttt 10713931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 10619816 - 10619980
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  10619816 ctacccctaataatatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccagtcgtacttcaaattatttg 10619915  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  10619916 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 10619980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 15757429 - 15757593
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  15757429 ctacccctaataatatatatttaactaccccaagtttaattttagatgaaataatattttctatctttatttaacttccgatcgaacttcaaattatttg 15757528  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  15757529 ataatgttgtataagaatcgaaagattaacacccaaaagagataaataataaataataacaatat 15757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 7493428 - 7493576
Alignment:
Q  9 aataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtc 108  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||| || |||||    
T  7493428 aataatatatatttggctaccccaagttttattttaagtgaaataattttttccatctttatttagctttcggtcgaacttcaaattatttaatcatgtc 7493527  T
Q  109 gtataggaaccaaaagattaacacccaaaagagataaataataaataat 157  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||    
T  7493528 gtataggaaccggaagactaacacccaaaagagataaataataaataat 7493576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 48770403 - 48770542
Alignment:
Q  16 tatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtatagg 115  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| |  ||| |||||||||||||||||||| || ||||||||||||    
T  48770403 tatatttagctaccccaagttttattttaagtgaaataattttttctatctttattcagtttc-ggtcgaacttcaaattatttaatcatgtcgtatagg 48770501  T
Q  116 aaccaaaagattaacacccaaaagagataaataataaataa 156  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  48770502 aaccgaaagaataacacccaaaatagataaataataaataa 48770542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44429870 - 44429776
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 95  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44429870 ctacccctaataatatttatttggctaccccaaatttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 44429776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 33409948 - 33409802
Alignment:
Q  14 tatatatttggctacctcaagtttaattttaagtgaaataa-tttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtat 112  Q
    |||||||||  |||||  |||||| |||||| | ||||||| ||||| | ||| ||||||| |||||| ||||||||||||| |||| ||  | ||||||    
T  33409948 tatatatttaactaccctaagttttattttacgggaaataactttttcccatccttatttagcttccgatcgaacttcaaatgatttaatcttatcgtat 33409849  T
Q  113 aggaaccaaaagattaacacccaaaagagataaataataaataataa 159  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||    
T  33409848 aggaaccagaagattaacatccaaaaaagataaataataaataataa 33409802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44592610 - 44592668
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  44592610 ctacccctaataatatatatttggctaccccaagtttgattttaggtgtaataattttt 44592668  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36157011 - 36156955
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattt 57  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||    
T  36157011 ctacccctaataatatatatttggctaccccaagttcaattttaggtgtaataattt 36156955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29681101 - 29681158
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  29681101 ctacccctgataatatatatttggctaccccaagtttgattttagttgaaataatttt 29681158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27773576 - 27773634
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||| ||||| ||||||  |||||| ||| ||||||||||    
T  27773576 ctacccctaataatatatatttgcctaccccaagttcgattttaggtgtaataattttt 27773634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39618494 - 39618458
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagttt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39618494 ctacccctaataatatatatttggctaccccaagttt 39618458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6764509 - 6764567
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||  || ||||||||||    
T  6764509 ctaccgctaataatatatatttggctatcccaaatttaattttagatggaataattttt 6764567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43022572 - 43022630
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||||||||||||||||||||||||  |||||  ||||||  || ||||||||||    
T  43022572 ctacccctaataatatatatttggctacccaaagttcgattttagatgtaataattttt 43022630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48366733 - 48366676
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttt 58  Q
    |||||||| |||||||||||||||||| |  |||||| ||||||  ||||||||||||    
T  48366733 ctacccctgataatatatatttggctatcctaagtttgattttagttgaaataatttt 48366676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5382721 - 5382553
Alignment:
Q  1 ctacccctaataatatatat--ttggctacctc-aagtttaattttaa-gtgaaataatttttactatctttatttaacttccggtcgaacttcaaatta 96  Q
    ||||||||||||||||||||  || |||||| | || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5382721 ctacccctaataatatatatatttagctacccccaaatttaattttaaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaatta 5382622  T
Q  97 tttgataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaatat 165  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5382621 tttgataatgtcgtataagaaccgaaagattaacacccaaaagagataaataataaataataacaatat 5382553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 7494759 - 7494895
Alignment:
Q  16 tatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtatagg 115  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7494759 tatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtatagg 7494858  T
Q  116 aaccaaaagattaacacccaaaagagataaataataa 152  Q
    |||| |||||||||||||||||||||| ||| |||||    
T  7494859 aaccgaaagattaacacccaaaagagaaaaagaataa 7494895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 10585123 - 10585285
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||| |||| | ||| ||| |||||||||||||||||| || | ||||||||||| ||| |||||||||||||||||||||     
T  10585123 ctacccctaataatatatatttagctatcccaaattttattttaagtgaaataattctttccatctttatttagctttcggtcgaacttcaaattattta 10585222  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  10585223 atcatgtcgtataggaaccggaagaataacacccaaaagagataaataataaataataacaat 10585285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 36314606 - 36314444
Alignment:
Q  2 tacccctaataatatatatttggctacctc-aagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttg 100  Q
    |||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||      
T  36314606 tacccctaataatatatatttggctacccccaagttttattttaaatgaaataattttttccatctttatttaacttccggtcaaactttaaattattca 36314507  T
Q  101 ataatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    || ||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||    
T  36314506 atcatgtcgtataggatccgaaagaataacatccaaaagagataaataataaataataacaat 36314444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 1593122 - 1592961
Alignment:
Q  2 tacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttga 101  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||  |    
T  1593122 tacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttccatctttatttaacttccggtcaaactttaaattattcaa 1593023  T
Q  102 taatgtcgtataggaaccaaaagattaacacccaaaagagataaataataaataataacaat 163  Q
    | |||||||| |||| |  ||||| ||  |||||||||||||||||||||||||||||||||    
T  1593022 tcatgtcgtacaggatctgaaagaatagaacccaaaagagataaataataaataataacaat 1592961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 1043386 - 1043292
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 95  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043386 ctacccctaataatatttatttggctaccccaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 1043292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9190375 - 9190281
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 95  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9190375 ctacccctaataatatttatttggctaccccaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 9190281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 22333510 - 22333390
Alignment:
Q  38 aattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtataggaaccaaaagattaacacccaaa 137  Q
    ||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||    
T  22333510 aattttatgtgaaataattttttccatctttatttagcttccggtcaaacttcaaattatttgataatgttgtaaaggaatcggaagattaacacccaaa 22333411  T
Q  138 agagataaataataaataata 158  Q
     |||||||||||||| |||||    
T  22333410 ggagataaataataagtaata 22333390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 12563847 - 12563719
Alignment:
Q  24 gctacctcaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtataggaaccaaaa 123  Q
    |||||| || |||| |||||||||||||||||||||   ||  ||||||| |||||||||||||||||||||| || || ||||||||| ||||    ||    
T  12563847 gctaccccaggttttattttaagtgaaataatttttttcattcttatttagcttccggtcgaacttcaaattacttaatcatgtcgtatgggaattggaa 12563748  T
Q  124 gattaacacccaaaagagataaataataa 152  Q
    |||||||| ||||||||||||||||||||    
T  12563747 gattaacatccaaaagagataaataataa 12563719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 10412696 - 10412838
Alignment:
Q  7 ctaataatatatatttggctacctcaagtttaattttaagtgaaataatttttact-atctttatttaacttccggtcgaacttcaaattatttgataat 105  Q
    ||||||||||| |||| |||||| ||| ||| |||||||||||| ||||||||  | || ||||||||||||  ||| ||||||||||||||    | ||    
T  10412696 ctaataatatacatttagctacc-caaattttattttaagtgaactaattttttttcatgtttatttaacttttggttgaacttcaaattat---gtcat 10412791  T
Q  106 gtcgtataggaaccaaaagattaacacccaaaagagataaataataa 152  Q
    || |||||||||| | |||||||||||||||||||||||||||||||    
T  10412792 gttgtataggaactagaagattaacacccaaaagagataaataataa 10412838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41732669 - 41732611
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||  |||||||||||||    
T  41732669 ctacccctaataatatatatttggctaccccaagttagattttagttgaaataattttt 41732611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2096125 - 2096183
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| |||  |||||||||    
T  2096125 ctacccctaataatatatatttggctaccccaagttcgattttaggtgtcataattttt 2096183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21278635 - 21278693
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagtttaattttaagtgaaataattttt 59  Q
    |||||||||||||||| |||||| ||||| ||||||| ||||||  |||||||||||||    
T  21278635 ctacccctaataatatttatttgactaccccaagtttgattttagttgaaataattttt 21278693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 19590932 - 19590798
Alignment:
Q  26 tacctcaagtttaattttaagtgaaataatttttact-atctttatttaacttccggtcgaacttcaaattatttgataatgtcgtataggaaccaaaag 124  Q
    |||| ||||||| |||||||||| |||||| |||  | ||| |||||||  || |||||| | ||| |||||||||||  ||| |||||||||||| | |    
T  19590932 taccccaagttttattttaagtggaataatcttttttcatccttatttagttttcggtcgtatttcgaattatttgattttgttgtataggaaccagagg 19590833  T
Q  125 attaacacccaaaagagataaataataaataataa 159  Q
    | ||||||  |||| || ||||| |||||||||||    
T  19590832 aataacacttaaaacagttaaatgataaataataa 19590798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14160624 - 14160588
Alignment:
Q  1 ctacccctaataatatatatttggctacctcaagttt 37  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  14160624 ctacccctaataatatatagttggctaccccaagttt 14160588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21613420 - 21613392
Alignment:
Q  1 ctacccctaataatatatatttggctacc 29  Q
    |||||||||||||||||||||||||||||    
T  21613420 ctacccctaataatatatatttggctacc 21613392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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