View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_46 (Length: 249)
Name: NF0542_low_46
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 39135165 - 39135402
Alignment:
| Q |
10 |
aacaatatgaagaagttatattataatttagaggcaactttaatcaataatgataatcannnnnnnnnnnngaggggtcaataatgataatcattgttgt |
109 |
Q |
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| T |
39135165 |
aacaaaatgaagaagttatattataatttagaggcaactttaatcaataacgataatcgttttttttttt--aggggtcaataatgataatcattgttgt |
39135262 |
T |
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| Q |
110 |
ttatatgttactatgatttaattaatttctacaaccccacacattgtttgttcttatgaggaaattatttgcaattttggagtatcttttgtggacccca |
209 |
Q |
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| T |
39135263 |
ttatatgttactatgatttaattaatttctacaaccccgcacattgttttgttttatgaggaaattatttgcaattttggagtatcttttgtggacccca |
39135362 |
T |
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| Q |
210 |
cacctctacacaacaaactcattgctaccaaaaataacaa |
249 |
Q |
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| T |
39135363 |
cacctccacacaacaaactcattgctaccaaaaataacaa |
39135402 |
T |
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