View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_48 (Length: 244)
Name: NF0542_low_48
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_48 |
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| [»] chr2 (8 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 39136071 - 39135837
Alignment:
| Q |
10 |
ctcttaactgacagtgtagttgtatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttcacgagaagccgattgcgatgtatttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39136071 |
ctcttaactgacagtgtagttgtatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttcacgagaagccgattgcgatgtatttt |
39135972 |
T |
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| Q |
110 |
tatcgaatgatgcaagccatttaaaatttaagtattcttcatcaccaacacaaaactttggcttatgagtagcctcaacaatatccatcattcaactata |
209 |
Q |
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| T |
39135971 |
tatcgaatgatgcaagccatttaaaatttaagtattcttcatcaccaacacaaaactttggcttatgagtagcctcaacaatatccatcattcaactata |
39135872 |
T |
|
| Q |
210 |
gaaactataacctctcagcaattacaagaacacct |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39135871 |
gaaactataacctctcagcaattacaagaacacct |
39135837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 39416726 - 39416875
Alignment:
| Q |
79 |
tcttcacgagaagccgattgcgatgtatttttatcgaatgatgcaagccatttaaaatttaag---tattcttcatcaccaacacaaaactttggcttat |
175 |
Q |
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|||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||| ||||||||| |
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| T |
39416726 |
tcttcacgtgaagctgaatgcgatgtttttttatcgaatgatgcaagccatttaaaattgaagtgctcttcatcatcaccaacacaaaaaattggcttat |
39416825 |
T |
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| Q |
176 |
gagtagcctcaacaatatccatcattcaactatagaaactataacctctc |
225 |
Q |
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| T |
39416826 |
cagaagcctcaacaacatccatcattgaactatagaaactgtaaactctc |
39416875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 39488406 - 39488542
Alignment:
| Q |
79 |
tcttcacgagaagccgattgcgatgtatttttatcgaatgatgcaagccatttaaaatttaagtattct---tcatcaccaacacaaaactttggcttat |
175 |
Q |
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| T |
39488406 |
tcttcacgagaagctgaatgcgatgtttttttatcaaatgatgcgagccatttaaaatttaagtgttcttcatcatcaccaccacaaaattttagcttat |
39488505 |
T |
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| Q |
176 |
gagtagcctcaacaatatccatcattcaactatagaaact |
215 |
Q |
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| T |
39488506 |
tagaagctt---caaaatccatcattcaagtatagaaact |
39488542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 39877634 - 39877794
Alignment:
| Q |
79 |
tcttcacgagaagccgattgcgatgtatttttatcgaatgatgcaagccatttaaaatttaag---tattcttcatcaccaacacaaaactttggcttat |
175 |
Q |
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|||||||||||| | || |||||||| |||||||||||||||| |||||||||||||| ||| ||| |||||||||||||| || ||||| |||| |
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| T |
39877634 |
tcttcacgagaatctgaatgcgatgtttttttatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttat |
39877733 |
T |
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| Q |
176 |
gagtagcctcaacaatatccatcattcaactatag-aaactataacctctcagcaattaca |
235 |
Q |
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| T |
39877734 |
tagaagcctcgacaacatccatgattcaactatagaaaactttaaactctcagctattaca |
39877794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 39474632 - 39474755
Alignment:
| Q |
101 |
atgtatttttatcgaatgatgcaagccatttaaaatttaagtattcttcatca---ccaacacaaaactttggcttatgagtagcctcaacaatatccat |
197 |
Q |
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||||| ||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| |||||||||| || ||||| |||||||||| |
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| T |
39474632 |
atgtacttttatcgaatgatgttagccatttaaaatttaaatgttcttcatcatctccaacacaaaaatttggcttatcagaagcct---caatatccat |
39474728 |
T |
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| Q |
198 |
cattcaactatagaaactataacctct |
224 |
Q |
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||| ||||||||||||| ||| |||| |
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| T |
39474729 |
tattgaactatagaaactgtaaactct |
39474755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 39422897 - 39423016
Alignment:
| Q |
97 |
tgcgatgtatttttatcgaatgatgcaagccatttaaaatttaagtattcttcat---caccaacacaaaactttggcttatgagtagcctcaacaatat |
193 |
Q |
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|||||||| |||||||||||||||| ||||||||||||| |||| | |||||| |||||||||| || ||||| |||| || ||||||||||| || |
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| T |
39422897 |
tgcgatgtttttttatcgaatgatgtgtgccatttaaaattgaagtgtccttcatcatcaccaacacataaatttgggttatcagaagcctcaacaacat |
39422996 |
T |
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| Q |
194 |
ccatcattcaactatagaaa |
213 |
Q |
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|||| ||| ||||||||||| |
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| T |
39422997 |
ccatgattgaactatagaaa |
39423016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 39422816 - 39422869
Alignment:
| Q |
31 |
gtatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttca |
84 |
Q |
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||||||||||||||| ||||||||||||| |||| | ||||||||||||||||| |
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| T |
39422816 |
gtatccctcttcttaggaaaccttgctgacaaaggaacatcatcatcatcttca |
39422869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 39457828 - 39457709
Alignment:
| Q |
97 |
tgcgatgtatttttatcgaatgatgcaagccatttaaaatttaagtattct------tcatcaccaacacaaaactttggcttatgagtagcctcaacaa |
190 |
Q |
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| T |
39457828 |
tgcgatgtttttttatcaaatgatgcaagccatttaaaattgaaagtttcttcatcatcatcacgaacacaaaactttgacttatcagaagcct---caa |
39457732 |
T |
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| Q |
191 |
tatccatcattcaactatagaaa |
213 |
Q |
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| |||||||||||||||||||| |
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| T |
39457731 |
aacccatcattcaactatagaaa |
39457709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 19806474 - 19806220
Alignment:
| Q |
10 |
ctcttaactgacagtgtagttgtatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttc---------acgagaagccgattgcg |
100 |
Q |
| |
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||||| |||| |||||||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||| ||||||||| ||||||| |
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| T |
19806474 |
ctcttgactggcagtgtagttgtatgcctcttcttatgaaaccataatgataaagtatcatcatcatcttcttcttcttcttcacgagaagctgattgcg |
19806375 |
T |
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| Q |
101 |
atgtatttttatcgaatgatgcaagccatttaaaatttaagtattcttcatca---------------ccaacacaaaactttggcttatgagtagcctc |
185 |
Q |
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||||||||||||| ||||||| ||||||||||| ||||||| |||||||||| |||||||| ||||||||||||| | |||||| |
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| T |
19806374 |
atgtatttttatcaaatgatgtgagccatttaaa-tttaagtgttcttcatcatcatcatcaccatcaccaacacagaactttggcttatcaaaagcctc |
19806276 |
T |
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| Q |
186 |
aacaatatccatcattcaactatagaaactataacctctcagcaattacaagaacacct |
244 |
Q |
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||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
19806275 |
aacaacatccat---tcaactatagaaactgtaacttctcagcaattacaagaacacct |
19806220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 32984803 - 32984770
Alignment:
| Q |
10 |
ctcttaactgacagtgtagttgtatccctcttct |
43 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
32984803 |
ctcttaactgacagtgtagtagtatccctcttct |
32984770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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