View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_49 (Length: 236)
Name: NF0542_low_49
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38794175 - 38794308
Alignment:
| Q |
1 |
taagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctttgtgctgcgcttct |
100 |
Q |
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| T |
38794175 |
taagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgctgcgcttct |
38794274 |
T |
|
| Q |
101 |
ttctccgttgaagtgaaactttgaatttgtagtt |
134 |
Q |
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| T |
38794275 |
ttctccgttgaagtgaaactttgaatttgtagtt |
38794308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38609392 - 38609525
Alignment:
| Q |
1 |
taagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctttgtgctgcgcttct |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38609392 |
taagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgctgcgcttct |
38609491 |
T |
|
| Q |
101 |
ttctccgttgaagtgaaactttgaatttgtagtt |
134 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
38609492 |
ttctccattgaagtgaaactttgaatttgtagtt |
38609525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 34592970 - 34593071
Alignment:
| Q |
33 |
aaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtag |
132 |
Q |
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| T |
34592970 |
aaagtgaaactctgaatttgtagttaacttgcattgttgtttagtttgtggctttgtgctgcacttctttatctgttgaagtcaaactttgaatttgtag |
34593069 |
T |
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| Q |
133 |
tt |
134 |
Q |
| |
|
|| |
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| T |
34593070 |
tt |
34593071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 38120667 - 38120618
Alignment:
| Q |
85 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagtt |
134 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
38120667 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagtt |
38120618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 38609502 - 38609538
Alignment:
| Q |
34 |
aagtgaaactctgaatttgtagttaactcacattgtt |
70 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
38609502 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38609538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 38794285 - 38794321
Alignment:
| Q |
34 |
aagtgaaactctgaatttgtagttaactcacattgtt |
70 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
38794285 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38794321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 33078577 - 33078678
Alignment:
| Q |
12 |
ttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctttgtgctgcgcttctttctccgttga |
111 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| || ||||| |
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| T |
33078577 |
ttacactgttgttcatgtacaaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgct-cacttctttatctgttga |
33078675 |
T |
|
| Q |
112 |
agt |
114 |
Q |
| |
|
||| |
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|
| T |
33078676 |
agt |
33078678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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