View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_5 (Length: 614)
Name: NF0542_low_5
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 83 - 519
Target Start/End: Complemental strand, 2213441 - 2213018
Alignment:
| Q |
83 |
cataggagacaaagaaataaataagaacgggtataaaaccnnnnnnnnnnnn--caaatattaccataatctgcaacaaacagagtgaatgtattgtatt |
180 |
Q |
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| T |
2213441 |
cataggagacaaagaaataaataagaacgggtataaaaccaaaaaaaaaaaaaacaaatattaccataatctgcaaca----gagtgaatgtattgtatt |
2213346 |
T |
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| Q |
181 |
aaggagagagggcattaaaagtgtattctaggagaggtaagggaaggacagttgaaaaacagatgtattgtgttggaatgggttaataggataggtaaat |
280 |
Q |
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| T |
2213345 |
aaggagagagggcattaaaagtgtattctaggagaggtaagggaaggacagttgaaaaacagatgtattgtgttggaatgggttaataggataggtaaat |
2213246 |
T |
|
| Q |
281 |
gaaaaggaggttagaagagtacaaatcagacccgggaagatgtggacaaagttggagccttggagaaggaaagattccattgagttgattgcagagttgg |
380 |
Q |
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| T |
2213245 |
gaaaaggaggttagaagagtacaaatcggatccgggaaggtgtggacaaagttggagccttggagaaggaa-----------agttgattgcagagttgg |
2213157 |
T |
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| Q |
381 |
agaaaatctttgaggtgcgaagtttggcagcgaaactgcacttgccttacaaattaatatctagaaaatgggaagcgcgacaacaatcaatttcagtttt |
480 |
Q |
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| T |
2213156 |
agaaaatctttgaggtgcaaagtttggcagcgaaactgcagttgccttacaaattaatatctagaaaatgggaagcgcgacaacaatcaatttcagtttt |
2213057 |
T |
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| Q |
481 |
tgctcaattaaagcctataactggttgcaaagcctctac |
519 |
Q |
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| T |
2213056 |
tgctcaattaaagcctataactggttgcaaagcctctac |
2213018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 89 - 519
Target Start/End: Complemental strand, 2200784 - 2200374
Alignment:
| Q |
89 |
agacaaagaaataaataagaacgggtataaaaccnnnnnnnnnnnncaaatattaccataatctgcaacaaacagagtgaatgtattgtattaaggagag |
188 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
2200784 |
agacatagaaataaataagaacgggtataaaaccaaaaaaaaaaa-caaatattaccataatccgcaacaaacagagtgagtgtattgtattaaggagag |
2200686 |
T |
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| Q |
189 |
agggcattaaaagtgtattctaggagaggtaagggaaggacagttgaaaaacagatgtattgtgttggaatgggttaataggataggtaaatgaaaagga |
288 |
Q |
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| T |
2200685 |
agggcattaaaagtatattctaggagaggtaagagaaggacagttggaaaacagatgta--gtgtaggaaccagttaataggataggtaaatgaaaagga |
2200588 |
T |
|
| Q |
289 |
ggttagaagagtacaaatcagacccgggaagatgtggacaaagttggagccttggagaaggaaagattccattgagttgattgcagagttggagaaaatc |
388 |
Q |
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| T |
2200587 |
ggttagaagagtacaaatcagatcctggaaggtgtagacaaagttggagccttggagaaggaaaaattacattgagttgattgcagagttgga------- |
2200495 |
T |
|
| Q |
389 |
tttgaggtgcgaagtttggcagcgaaactgcacttgccttacaaattaatatctagaaaatgggaagcgcgacaacaatcaatttcagtttttgctcaat |
488 |
Q |
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|||||| |||| ||| ||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||| |||| || |
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| T |
2200494 |
----------gaagttcggcaaagaatctgcacttgccttgcaaattaatatcgtgaaaatgagaagcgcggcaacaatcaatttcagttttggctccat |
2200405 |
T |
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| Q |
489 |
taaagcctataactggttgcaaagcctctac |
519 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
2200404 |
caaagcctataactcgttgcaaagcctctac |
2200374 |
T |
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