View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_50 (Length: 230)
Name: NF0542_low_50
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 53180353 - 53180448
Alignment:
| Q |
125 |
aatatttggaagaagatgaaatggttgaagcggaaaaagnnnnnnngcaatgcttgatactttgaagaagaagaagaaattagacaaggacaagaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53180353 |
aatatttggaagaagatgaaatggttgaagcggaaaacgtttttttgcagtgcttgatactttgaagaagaagaagaaatcggacaaggacaagaa |
53180448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 49949223 - 49949179
Alignment:
| Q |
176 |
gcttgatactttgaagaagaagaagaaattagacaaggacaagaa |
220 |
Q |
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| T |
49949223 |
gcttgatactttgaagaagaagaagaaatctgataaggacaagaa |
49949179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 49958554 - 49958510
Alignment:
| Q |
176 |
gcttgatactttgaagaagaagaagaaattagacaaggacaagaa |
220 |
Q |
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| T |
49958554 |
gcttgatactttgaagaagaagaagaaatctgataaggacaagaa |
49958510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 32518988 - 32518893
Alignment:
| Q |
125 |
aatatttggaagaagatgaaatggttgaagcggaaaaagnnnnnnngcaatgcttgatactttgaagaagaagaagaaattagacaaggacaagaa |
220 |
Q |
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||||||||||||||||||| |||||||||||| |||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32518988 |
aatatttggaagaagatgagatggttgaagcgaaaaaggtttttttgcagtgcttgatactttgaagaagaagaagaaatcagacaaggacaagaa |
32518893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 47533682 - 47533720
Alignment:
| Q |
176 |
gcttgatactttgaagaagaagaagaaattagacaagga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
47533682 |
gcttgatactttgaagaagaagaagaaattagacaagga |
47533720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 17356862 - 17356818
Alignment:
| Q |
176 |
gcttgatactttgaagaagaagaagaaattagacaaggacaagaa |
220 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
17356862 |
gcttgatactttgaagaagaagaagaaatcagacaatgacaagaa |
17356818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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