View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_51 (Length: 230)

Name: NF0542_low_51
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_51
NF0542_low_51
[»] chr3 (3 HSPs)
chr3 (120-220)||(53180348-53180448)
chr3 (176-220)||(49949179-49949223)
chr3 (176-220)||(49958510-49958554)
[»] chr7 (1 HSPs)
chr7 (124-220)||(32518893-32518989)
[»] chr1 (1 HSPs)
chr1 (176-214)||(47533682-47533720)
[»] chr4 (1 HSPs)
chr4 (176-220)||(17356818-17356862)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 53180348 - 53180448
Alignment:
Q  120 ccaagaatatttggaagaagatgaaatggttgaagcggaaaaagnnnnnnngcaatgcttgatactttgaagaagaagaagaaattagacaaggacaaga 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |       ||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  53180348 ccaagaatatttggaagaagatgaaatggttgaagcggaaaacgtttttttgcagtgcttgatactttgaagaagaagaagaaatcggacaaggacaaga 53180447  T
Q  220 a 220  Q
    |    
T  53180448 a 53180448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 49949223 - 49949179
Alignment:
Q  176 gcttgatactttgaagaagaagaagaaattagacaaggacaagaa 220  Q
    |||||||||||||||||||||||||||||  || |||||||||||    
T  49949223 gcttgatactttgaagaagaagaagaaatctgataaggacaagaa 49949179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 49958554 - 49958510
Alignment:
Q  176 gcttgatactttgaagaagaagaagaaattagacaaggacaagaa 220  Q
    |||||||||||||||||||||||||||||  || |||||||||||    
T  49958554 gcttgatactttgaagaagaagaagaaatctgataaggacaagaa 49958510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 32518989 - 32518893
Alignment:
Q  124 gaatatttggaagaagatgaaatggttgaagcggaaaaagnnnnnnngcaatgcttgatactttgaagaagaagaagaaattagacaaggacaagaa 220  Q
    |||||||||||||||||||| |||||||||||| |||| |       ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  32518989 gaatatttggaagaagatgagatggttgaagcgaaaaaggtttttttgcagtgcttgatactttgaagaagaagaagaaatcagacaaggacaagaa 32518893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 47533682 - 47533720
Alignment:
Q  176 gcttgatactttgaagaagaagaagaaattagacaagga 214  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47533682 gcttgatactttgaagaagaagaagaaattagacaagga 47533720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 17356862 - 17356818
Alignment:
Q  176 gcttgatactttgaagaagaagaagaaattagacaaggacaagaa 220  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  17356862 gcttgatactttgaagaagaagaagaaatcagacaatgacaagaa 17356818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1058 times since January 2019
Visitors: 3662