View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0542_low_56 (Length: 205)

Name: NF0542_low_56
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0542_low_56
NF0542_low_56
[»] chr4 (1 HSPs)
chr4 (1-190)||(42767554-42767743)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 42767554 - 42767743
Alignment:
Q  1 actcctgacatgatgcttgcaatcggaccaatccaaactcccaaataaataatcagtactattattagttagagtcttcaaactgaaagtcactctaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42767554 actcctgacatgatgcttgcaatcggaccaatccaaactcccaaataaataatcagtactattattagttagagtcttcaaactgaaagtcactctaaac 42767653  T
Q  101 tctttcttttcacccttttccttgaagtttagtaccttaggctctacggagactaaaacttcatgaggtgcttgaatgtgaactttatat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42767654 tctttcttttcacccttttccttgaagtttagtaccttaggctctacggagactaaaacttcatgaggtgcttgaatgtgaactttatat 42767743  T

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