View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_57 (Length: 204)
Name: NF0542_low_57
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 8431646 - 8431826
Alignment:
| Q |
1 |
atgctgttggtaagggtttttctggacctatggttactatgattccatatgaagctagaagaaaacctaaagatggtggtggcaatgaaactcaagaacc |
100 |
Q |
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| T |
8431646 |
atgctgttggtaagggtttttctggacctatggttactatgattccatatgaagctagaagaaaacctaaagatggtggtggcaatgaaactcaagaacc |
8431745 |
T |
|
| Q |
101 |
cacttcaccaaagatttcttgtatgggacagatcaagcatcacaagaagaaaaatattccaaaacccaacaaagatctctt |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8431746 |
cacttcaccaaagatttcttgtatgggacagatcaagcatcacaagaagaaaaatattccaaaacccaacaaagatctctt |
8431826 |
T |
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