View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0542_low_8 (Length: 483)
Name: NF0542_low_8
Description: NF0542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0542_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 93 - 473
Target Start/End: Complemental strand, 54980237 - 54979858
Alignment:
| Q |
93 |
caaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaactataagaagtttaagtctgcagttcaa |
192 |
Q |
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| T |
54980237 |
caaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaattataagaagtttaagtctgcagttcaa |
54980138 |
T |
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| Q |
193 |
tccctgataacta---acataaccaccaataactaatatacaaatttacatactgatgagccggcctcctcatttggcattcaaaacatgtctaatattt |
289 |
Q |
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| T |
54980137 |
tccctgataactactaacataaccaccaataactaatatacaaatttacatactgatgagcc----tcctcatttggcattcaaaacatgtctaatattt |
54980042 |
T |
|
| Q |
290 |
agccttatcaaattggcatcataactaatgttttattcaaccactatagctgcacctcagattttggcctaatgaaggttgacaataaatagaggatcct |
389 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54980041 |
agccttatcaaattgacatcataactaatgttttatgcaaccactatagctgcacctcagattttggcctaatgaagattgacaataaatagaggatcct |
54979942 |
T |
|
| Q |
390 |
ttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatcatactacaagtttcaagaatta |
473 |
Q |
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| T |
54979941 |
ttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatcatactacaagtttcaagaatta |
54979858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 54971597 - 54971476
Alignment:
| Q |
334 |
tatagctgcacctcagattttggcctaatgaaggttgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatg |
433 |
Q |
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|||||| || ||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
54971597 |
tatagccgcgcctcagattttggtctaatgaagattgatgataaaggaaggatcctttcatttagtgaaaagcctaaa-ggagcagagctcaaagcaatg |
54971499 |
T |
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| Q |
434 |
gtaagtctcatgtttatcatact |
456 |
Q |
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||||||||||||||||||||||| |
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| T |
54971498 |
gtaagtctcatgtttatcatact |
54971476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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