View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543-Insertion-1 (Length: 751)

Name: NF0543-Insertion-1
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543-Insertion-1
NF0543-Insertion-1
[»] chr8 (20 HSPs)
chr8 (324-708)||(1459116-1459503)
chr8 (324-708)||(2428823-2429210)
chr8 (7-269)||(2429265-2429523)
chr8 (160-269)||(1459559-1459668)
chr8 (324-448)||(2432004-2432128)
chr8 (324-419)||(2435468-2435563)
chr8 (326-416)||(2505711-2505801)
chr8 (326-416)||(2512369-2512459)
chr8 (326-416)||(2516645-2516735)
chr8 (633-708)||(2506282-2506354)
chr8 (486-586)||(2431890-2431990)
chr8 (49-100)||(1459674-1459725)
chr8 (655-710)||(2517275-2517329)
chr8 (658-708)||(2512917-2512967)
chr8 (7-73)||(2435800-2435866)
chr8 (7-57)||(2516489-2516539)
chr8 (327-414)||(2497093-2497180)
chr8 (7-57)||(2432455-2432505)
chr8 (481-617)||(2435290-2435427)
chr8 (677-710)||(2497596-2497629)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 324 - 708
Target Start/End: Complemental strand, 1459503 - 1459116
Alignment:
Q  324 cagaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtgtcgt 423  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459503 cagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtgtcgt 1459404  T
Q  424 aattatattcatttagtataattataggatagtggttataattaattatgtacaggtttccaaaatttaaaatagtattttgtatcataatcaaacta-- 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1459403 aattatattcatttagtataattataggatagtggttataattaattatgtacaggtttccaaaatttaaaatagtattttgtatcataatcaaactaac 1459304  T
Q  522 -acttaacctcaacaagtgagcaaagacttggatagtggttattgtagttaggctaattcaaaatagcactactttaaaccgtagaatgaataatcaaat 620  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459303 tacttaacctcaacaagtgagcaaagacttggatagtggttattgaagttaggctaattcaaaatagcactactttaaaccgtagaatgaataatcaaat 1459204  T
Q  621 gttgatgttgattcatcatttatgcaggaagcatatataacaacaataatcagacaaataccttctctttacttccagcacttccaac 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459203 gttgatgttgattcatcatttatgcaggaagcatatataacaacaataatcagacaaataccttctctttacttccagcacttccaac 1459116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 324 - 708
Target Start/End: Complemental strand, 2429210 - 2428823
Alignment:
Q  324 cagaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtgtcgt 423  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2429210 cagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtgtcgt 2429111  T
Q  424 aattatattcatttagtataattataggatagtggttataattaattatgtacaggtttccaaaatttaaaatagtattttgtatcataatcaaacta-- 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  2429110 aattatattcatttagtataattataggatagtggttataattaattatgtacaggtttccaaaatttaaaatagtattttgtatcataatcaaactaac 2429011  T
Q  522 -acttaacctcaacaagtgagcaaagacttggatagtggttattgtagttaggctaattcaaaatagcactactttaaaccgtagaatgaataatcaaat 620  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2429010 tacttaacctcaacaagtgagcaaagacttggatagtggttattgaagttaggctaattcaaaatagcactactttaaaccgtagaatgaataatcaaat 2428911  T
Q  621 gttgatgttgattcatcatttatgcaggaagcatatataacaacaataatcagacaaataccttctctttacttccagcacttccaac 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428910 gttgatgttgattcatcatttatgcaggaagcatatataacaacaataatcagacaaataccttctctttacttccagcacttccaac 2428823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 2429523 - 2429265
Alignment:
Q  7 agtaaatgccaatgccttctggaaagtatctagtttacataaattgatatctactagttattagtgtgtctcattttaccaggtaactatctatgaagca 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2429523 agtaaatgtcaatgccttctggaaagtatctagtttacataaattgatatctactagttattagtgtgtctcattttaccaggtaactatctatgaagca 2429424  T
Q  107 ctcacacgatacctgacactgataattaaatacacacgaataataatttggaaaaatagaagtgagtctatgcaatcacaagagacgctgttatgttggt 206  Q
    ||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2429423 ctcacacgatacctggcactgataa----atacacacgaataataatttggaaaaatagaagtgagtgtatgcaatcacaagagacgctgttatgttggt 2429328  T
Q  207 gtcagatattaacacgtgtcgaacacgccttgaatatatagttttgatgctaggtaactatac 269  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  2429327 gtcagatattaacacgtgtcggacacgccttgaatatatagtgttgatgctaggtaactatac 2429265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 1459668 - 1459559
Alignment:
Q  160 aaatagaagtgagtctatgcaatcacaagagacgctgttatgttggtgtcagatattaacacgtgtcgaacacgccttgaatatatagttttgatgctag 259  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  1459668 aaatagaagtgagtgtatgcaatcacaagagacgctgttatgttggtgtcagatattaacacgtgtcggacacgccttgaatatatagtgttgatgctag 1459569  T
Q  260 gtaactatac 269  Q
    |||| |||||    
T  1459568 gtaagtatac 1459559  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 448
Target Start/End: Complemental strand, 2432128 - 2432004
Alignment:
Q  324 cagaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtgtcgt 423  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||| ||||| | |    
T  2432128 cagacctttttaaagctgcattgaggtcaggttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccaccttgtgtgccat 2432029  T
Q  424 aattatattcatttagtataattat 448  Q
    ||||   |||||||| |||||||||    
T  2432028 aattcagttcatttaatataattat 2432004  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 2435563 - 2435468
Alignment:
Q  324 cagaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggtgtg 419  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||    
T  2435563 cagacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacctagtgtg 2435468  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 2505711 - 2505801
Alignment:
Q  326 gaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggt 416  Q
    ||||||||||| | ||||||||| ||| | |||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||    
T  2505711 gaccttttcaatgttgcattgaggtcttgctcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacctggt 2505801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 2512369 - 2512459
Alignment:
Q  326 gaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggt 416  Q
    ||||||||||| |||||||  || ||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||    
T  2512369 gaccttttcaatgctgcatccaggtcttgttcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacctggt 2512459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 2516645 - 2516735
Alignment:
Q  326 gaccttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctggt 416  Q
    |||||||| || ||||||||||| ||  |||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||    
T  2516645 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacatatccacctggt 2516735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 633 - 708
Target Start/End: Original strand, 2506282 - 2506354
Alignment:
Q  633 tcatcatttatgcaggaagcatatataacaacaataatcagacaaataccttctctttacttccagcacttccaac 708  Q
    ||||||||||||||||   || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  2506282 tcatcatttatgcagg---cacatataacaacaacaatcagacatataccttctctttacttccagcacttccaac 2506354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 486 - 586
Target Start/End: Complemental strand, 2431990 - 2431890
Alignment:
Q  486 aaatttaaaatagtattttgtatcataatcaaactaacttaacctcaacaagtgagcaaagacttggatagtggttattgtagttaggctaattcaaaat 585  Q
    ||||| ||||||||||||||||  |||| |||| ||||| || |||| |||||||  |||||| ||||| |||||||||||| ||||||| |||||||||    
T  2431990 aaattgaaaatagtattttgtaatataaccaaattaactaaatctcaccaagtgaataaagacatggattgtggttattgtaattaggctcattcaaaat 2431891  T
Q  586 a 586  Q
    |    
T  2431890 a 2431890  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 1459725 - 1459674
Alignment:
Q  49 attgatatctactagttattagtgtgtctcattttaccaggtaactatctat 100  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  1459725 attgatatctactggttattagtgtgtctcattttacctggtaactatctat 1459674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 655 - 710
Target Start/End: Original strand, 2517275 - 2517329
Alignment:
Q  655 atataacaacaataatcagacaaataccttctctttacttccagcacttccaacaa 710  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  2517275 atataacaaca-taatcagataaataccttctctttacttccagcacttccaacaa 2517329  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 658 - 708
Target Start/End: Original strand, 2512917 - 2512967
Alignment:
Q  658 taacaacaataatcagacaaataccttctctttacttccagcacttccaac 708  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2512917 taacaacaataattagataaataccttctctttacttccagcacttccaac 2512967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2435866 - 2435800
Alignment:
Q  7 agtaaatgccaatgccttctggaaagtatctagtttacataaattgatatctactagttattagtgt 73  Q
    |||||||| ||||||||||||||||||| ||| | ||||||||||||||||   |||||||||||||    
T  2435866 agtaaatgtcaatgccttctggaaagtacctaatatacataaattgatatcccatagttattagtgt 2435800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 2516489 - 2516539
Alignment:
Q  7 agtaaatgccaatgccttctggaaagtatctagtttacataaattgatatc 57  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  2516489 agtaaatgtcaatgccttctggaaagtacctaatttacataaattgatatc 2516539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 2497093 - 2497180
Alignment:
Q  327 accttttcaaagctgcattgagttctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacctg 414  Q
    |||||||||||||||||| ||| || || ||||| |||||||| ||  || ||||| ||||||||||||| ||||| | |||||||||    
T  2497093 accttttcaaagctgcatcgaggtcaggctcttccttgtagttgaaacctccatcaaatccaaatttattcttcaaaagatccacctg 2497180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 2432505 - 2432455
Alignment:
Q  7 agtaaatgccaatgccttctggaaagtatctagtttacataaattgatatc 57  Q
    |||||||| ||||||||||||||||||| ||| |||||||| |||||||||    
T  2432505 agtaaatgtcaatgccttctggaaagtacctaatttacatacattgatatc 2432455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 617
Target Start/End: Complemental strand, 2435427 - 2435290
Alignment:
Q  481 ttccaaaatttaaaatagta-ttttgtatcataatcaaactaacttaacctcaacaagtgagcaaagacttggatagtggttattgtagttaggctaatt 579  Q
    |||||||||| ||||||||| |||||||  ||||||||| ||||| || |||| ||||||| ||||||  ||||| || |||| || | |||| || | |    
T  2435427 ttccaaaattgaaaatagtatttttgtagtataatcaaattaactaaatctcaccaagtgaacaaagatatggattgttgttagtgcaattagacttagt 2435328  T
Q  580 caaaatagcactactttaaaccgtagaatgaataatca 617  Q
    |||||||  | |||||||||| || |||| ||||||||    
T  2435327 caaaataatagtactttaaacagtggaataaataatca 2435290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 710
Target Start/End: Original strand, 2497596 - 2497629
Alignment:
Q  677 aataccttctctttacttccagcacttccaacaa 710  Q
    ||||||||||||||||||||||||||||| ||||    
T  2497596 aataccttctctttacttccagcacttcctacaa 2497629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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