View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0543-Insertion-2 (Length: 677)
Name: NF0543-Insertion-2
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543-Insertion-2 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 10 - 677
Target Start/End: Complemental strand, 24028211 - 24027544
Alignment:
| Q |
10 |
tcttacactaagttgttcatcaatgctgacattccagagatcaatcaattcagagctaggttgctatatttaccactttttgtgcatttcccactaggta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24028211 |
tcttacactaagttgttcatcaatgctgacattccagagatcaatcaattcagagctaggttgctatatttaccactttttgtgcatttcccactaggta |
24028112 |
T |
|
| Q |
110 |
ttacatgtcatgcaccacttcatcactaatgatgcttttaattactaatccagcttacctaaatacgaacaagttcagtctcaaagccagctgacctgta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24028111 |
ttacatgtcatgcaccacttcatcactaatgatgcttttaattactaatccagcttacctaaatacgaacaagttcagtctcaaagccagctgacctgta |
24028012 |
T |
|
| Q |
210 |
cgcagtcactttctggtacacaatatacttctgaggaagatctactatctaataacacaagttcagtctccatggcctttcaaattgtgtcgaagacaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24028011 |
cgcagtcactttctggtacacaatatacttctgaggaagatctactatctaataacacaagttcagtctccatggcctttcaaattgtgtcgaagacaat |
24027912 |
T |
|
| Q |
310 |
tcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatga |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24027911 |
tcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttaatcatgg |
24027812 |
T |
|
| Q |
410 |
ccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatgaaaacaaggtggcaaaattaacaacaacaaatgtt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24027811 |
ccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggtacatgatgaaaacaaggtggcaaaactaacaacaacaaatgtt |
24027712 |
T |
|
| Q |
510 |
gtttttaaagaagttttccagaatgtttgacaggtaacttatatgtacattataaatcttcatcaattttagtttcattttaaatgnnnnnnngtactcc |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
24027711 |
gtttttaaagaagttttccagaatgtttgacaggtaactaatatgaacattataaatcctcatcaattttagtttcattttaaatgtttttttgtactcc |
24027612 |
T |
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| Q |
610 |
tactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttacacg |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027611 |
tactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttacacg |
24027544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 41860282 - 41860339
Alignment:
| Q |
301 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
358 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||| |
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| T |
41860282 |
gaagacaattcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41860339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 41888183 - 41888240
Alignment:
| Q |
301 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
358 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||| |
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| T |
41888183 |
gaagacaattcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41888240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 41879153 - 41879210
Alignment:
| Q |
301 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
358 |
Q |
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|||||||||||||||||||| | ||||| | ||||||||||||||||| |||||||| |
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| T |
41879153 |
gaagacaattcccaattgttttctcatatgctatgacaatcaacaaatctcaaggtca |
41879210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 276 - 481
Target Start/End: Complemental strand, 149249 - 149044
Alignment:
| Q |
276 |
tctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttg |
375 |
Q |
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||||||||||| |||||||| | | | ||||| |||||||| |||| ||||| |||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
149249 |
tctccatggccattcaaattatctaggagacagttcccaataattgtgtcatatgcaatgacaattaacaaatctcaagggcagtctcttgattgggttg |
149150 |
T |
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| Q |
376 |
gtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatga |
475 |
Q |
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|| |||||||||||| |||||| |||||||||| |||||||||||||| | || || ||||||||||| |||||||| ||||| || ||||||||| |
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| T |
149149 |
gtctatatttaccaagagatgtatttagtcatggtcaaatttatgttgccatatcaagggtaacaagcaaaaaaggtatcaaaattttgatacatgatga |
149050 |
T |
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| Q |
476 |
aaacaa |
481 |
Q |
| |
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|||||| |
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| T |
149049 |
aaacaa |
149044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 22060984 - 22060899
Alignment:
| Q |
273 |
cagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
358 |
Q |
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||||||||||||||||| |||||| | | || ||||| || ||| ||||||| || ||||||| || ||||||||||||||||| |
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| T |
22060984 |
cagtctccatggccttttaaattgattaggaggcaatttcccattattgtttcctatgcaatgaccattaacaaatcacaaggtca |
22060899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 22070034 - 22069865
Alignment:
| Q |
276 |
tctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttg |
375 |
Q |
| |
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||||||||||| |||||||| | | | |||||||| || |||||| ||| || | |||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
22070034 |
tctccatggccattcaaattatctaggagacaatttcctattgtttgttcttattaaatgactatcaataaatcacaaggtcaatctcttgattgggttg |
22069935 |
T |
|
| Q |
376 |
gtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaa |
445 |
Q |
| |
|
| | |||||||| |||||||| |||||||||| ||||| ||||||||| | || ||||| |||||||| |
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| T |
22069934 |
gactttatttacctaaagatgtatttagtcatgggcaaatatatgttgcaatctcaagagtcacaagcaa |
22069865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 302 - 454
Target Start/End: Complemental strand, 122533 - 122382
Alignment:
| Q |
302 |
aagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgttttt |
401 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||||| | ||||| ||| |||| |||| |
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| T |
122533 |
aagacaattttcaattgttgtctcatactcaatgacaatcaacaaatcacaaggtcgatccttagattatgttggcctctatttggcaagagat-atttt |
122435 |
T |
|
| Q |
402 |
agtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtat |
454 |
Q |
| |
|
|| |||| ||||||||||||||||||||||| || || ||||| |||||||| |
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| T |
122434 |
agccatggacaaatttatgttgcactttctagggtgactagcaaaaaaggtat |
122382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 22322502 - 22322579
Alignment:
| Q |
331 |
caatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatg |
408 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
22322502 |
caatgacaatcaataaatcacaaggtcagtctttggatcatgtaggtttatatttgccaaaagatgtttttagtcatg |
22322579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 9560 - 9593
Alignment:
| Q |
375 |
ggtttatatttaccaaaagatgtttttagtcatg |
408 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
9560 |
ggtttatatttgccaaaagatgtttttagtcatg |
9593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 114101 - 114016
Alignment:
| Q |
273 |
cagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
358 |
Q |
| |
|
||||||||||||||||| |||||| | | |||||||| || ||| ||||||| || ||||||| || ||||| ||||||||||| |
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|
| T |
114101 |
cagtctccatggccttttaaattgattaggagacaatttcctattattgtttcttatgcaatgaccattaacaagtcacaaggtca |
114016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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