View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0543-Insertion-3 (Length: 625)
Name: NF0543-Insertion-3
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 129 - 589
Target Start/End: Complemental strand, 43013502 - 43013041
Alignment:
| Q |
129 |
ggtgccatttagcttggacctttgcagatttggttcaagatggaccaannnnnnnncaaccattagattaaatcagctaccaattcttat-atagtccat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43013502 |
ggtgccatttagcttggacctttgcagatttggttcaagatggaccaattttttttcaaccattagattaaatcagctaccaattcttatcatagtccat |
43013403 |
T |
|
| Q |
228 |
ctgcatcaaatacaacccatcaacttcatctctccatcattgcaagctttctctttctctttcaaagtgtttcaatgcttaatactaatcatcaaattgt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013402 |
ctgcatcaaatacaacccatcaacttcatctctctatcattgcaagctttctctttctctttcaaagtgtttcaatgcttaatactaatcatcaaattgt |
43013303 |
T |
|
| Q |
328 |
aagaaccataaagagctccattcacaatctcaactcccaaaaaatccaaaatcatatcatattctaattttctactgcagatggctgacccaagctccca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43013302 |
aagaaccataaagagctccattcacaatctcaactcccaaaaaacccaaaatcatatcatattctaattttctactgcagatggctgacccaaactccca |
43013203 |
T |
|
| Q |
428 |
atccccaccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatcgtttcttttagagtgagaaaattcaaaactcnnnnnn |
527 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43013202 |
atccccgccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatcgtttcttttagagtgagaaaattcaaaactcaaaaaa |
43013103 |
T |
|
| Q |
528 |
ngcttaccatattaccaagcatttgccaaaatgataacaaaaagccatagaaaacagagata |
589 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43013102 |
agcttaccatattaccaagcatgtgccaaaatgataacaaaaagccatagaaaacagagata |
43013041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 129 - 608
Target Start/End: Complemental strand, 50152071 - 50151591
Alignment:
| Q |
129 |
ggtgccatttagcttggacctttgcagatttggttcaagatggaccaannnnnnnncaaccattagattaaatcagctaccaattcttat-atagtccat |
227 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
50152071 |
ggtgccatttagcttggatctttgcagatttggtctaagatggaccaattttttttcaaccattaaattaaatcagctaccaattcttatcatagtccat |
50151972 |
T |
|
| Q |
228 |
ctgcatcaaatacaacccatcaacttcatctctccatcattgcaagctttctctttctctttcaaagtgtttcaatgcttaatactaatcatcaaattgt |
327 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
50151971 |
ctacatcaaatacaacccatcaacttcatatctctatcattgcaagctttctctttctctttcaaagtgtttcaatgcttaatactaatcttcaaattgt |
50151872 |
T |
|
| Q |
328 |
aagaaccataaagagctccattcacaatctcaactcccaaaaaatccaaaatcatatcatattctaattttctactgcagatggctgacccaagctccca |
427 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50151871 |
aagaactataaagagctccattcacaatctcaactcccaaaaaacccaaaatcatatcatattctaattttctactgcagatggctgacccaagctccca |
50151772 |
T |
|
| Q |
428 |
atccccaccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatcgtttcttttagagtgagaaaattcaaaactcnnnnnn |
527 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50151771 |
atccctgccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatcgtttcttttagagtgagaaaattcaaaactcaaaaaa |
50151672 |
T |
|
| Q |
528 |
ngcttaccatattaccaagcatttgccaaaatgataacaaaaagccatagaaaacagagatataaccctttatggtagcac |
608 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
50151671 |
agcttaccatattaccaagcatgtgccaaaatgttaacataaagccatagaaaacagagatataaccctctatggtagcac |
50151591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 14998827 - 14998737
Alignment:
| Q |
432 |
ccaccactacttctctatattatagaaacgccatttgcaaggctaaagcaag-tttcatcgtttcttttagagtgagaaaattcaaaactc |
521 |
Q |
| |
|
|||| |||||||||| |||| |||||||| |||||||||||||| ||||||| |||||| |||||||||| | ||| |||||||||||||| |
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|
| T |
14998827 |
ccactactacttctccatatcatagaaacaccatttgcaaggctgaagcaagttttcatggtttcttttacaatgaaaaaattcaaaactc |
14998737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 14999221 - 14999123
Alignment:
| Q |
186 |
aaccattagattaaatcagctaccaattctta-tatagtccatctgcatcaaatacaacccatcaacttcatctctccatcattgcaagctttctcttt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||||||||||||| | ||| |||||||| |||||||| |
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|
| T |
14999221 |
aaccattagattaaatcagctaccaattcttaccatagtccatctgcaccaaataaaatatatcaacttcatctgtttatcgttgcaagcattctcttt |
14999123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 226 - 608
Target Start/End: Complemental strand, 34021307 - 34020920
Alignment:
| Q |
226 |
atctgcatcaaatacaacccatcaacttcatctctccatcattgcaagctttctctttctctttcaaagtgtttcaatgcttaatactaatcatcaaatt |
325 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
34021307 |
atctgcatcaaatacaatccatcaacttcatctctctatcattgcaagctttctctttctctttcaaagtgtttcaatgctaaatactgatcatcaaatt |
34021208 |
T |
|
| Q |
326 |
gtaagaaccataaagagctc----cattcacaatctcaactcccaaaaaatccaaaatcatatcatattctaattttctactgcagatggctgacccaag |
421 |
Q |
| |
|
|||||||| | ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34021207 |
gtaagaactacaaagagctcgctccattcacattctcaactcccaaaaaacccaaaatcatatcatattctaattttctactgcagatggctgacccaag |
34021108 |
T |
|
| Q |
422 |
ctcccaatccccaccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatc-gtttcttttagagtgagaaaattcaaaact |
520 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34021107 |
ctcccaatccctgccactacttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatctttttcttttagagtgagaaaattcaaaact |
34021008 |
T |
|
| Q |
521 |
cnnnnnnngcttaccatattaccaagcatttgccaaaatgataacaaaaagccatagaaaacagagatataaccctttatggtagcac |
608 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34021007 |
caaaaaaagcttaccatattaccaagcatgtgccaaaatgataacacaaagccatagaaaacagagatataaccctctatggtagcac |
34020920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 7945078 - 7945013
Alignment:
| Q |
186 |
aaccattagattaaatcagctaccaattcttat-atagtccatctgcatcaaatacaacccatcaa |
250 |
Q |
| |
|
|||| ||||||| ||||| ||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
7945078 |
aacctttagattgaatcaactaccaatttttattatagtccatccacatcaaatacaacccatcaa |
7945013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 6922363 - 6922484
Alignment:
| Q |
7 |
atgatgtgcctcgggtaaggttacttctaatagagggattctattgaaaaacagaatgataacacatggtattgcccatccactttaagggaaaatggga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6922363 |
atgatgtgcctcgggtaaggttacttctaatagagggattctattgaaaaacagaatgataacacatggtattgcccatccactttaagggaaaatggaa |
6922462 |
T |
|
| Q |
107 |
attatcaaacgatatcttatat |
128 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6922463 |
attatcaaacgatatcttatat |
6922484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 11762474 - 11762403
Alignment:
| Q |
440 |
acttctctatattatagaaacgccatttgcaaggctaaagcaagtttcatcgtttcttttagagtgagaaaa |
511 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||| |||||| |||||||||| | |||||||| |
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|
| T |
11762474 |
acttctctatataatagaaacaccatttgcaagaaggaagcaaatttcattgtttcttttacaatgagaaaa |
11762403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 27922514 - 27922579
Alignment:
| Q |
186 |
aaccattagattaaatcagctaccaattcttat-atagtccatctgcatcaaatacaacccatcaa |
250 |
Q |
| |
|
|||| ||||||| ||||| | |||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
27922514 |
aacctttagattgaatcaacaaccaattcttatcatggtccatctatatcaaatacaacccatcaa |
27922579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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