View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543-Insertion-4 (Length: 517)
Name: NF0543-Insertion-4
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 517
Target Start/End: Complemental strand, 33127321 - 33126828
Alignment:
| Q |
6 |
catgtctttggtgtggaacatggttcaaagtttatgcttgtaatccaaacttacttattgatatatgtagttttggtggtttagctcttttcaggaacaa |
105 |
Q |
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| T |
33127321 |
catgtctttggtgtggaacatggttcaaaatttatgcttgtaatccaaacttgcttattgatatatgtagttttggtggtttagctcttttcaggaacaa |
33127222 |
T |
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| Q |
106 |
ccaatggaggtgaaagtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagc |
205 |
Q |
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| T |
33127221 |
ccaatggaggtgaaagtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagc |
33127122 |
T |
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| Q |
206 |
taaatataaaatcaatgattgaattttaaaaattgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattatcctgat |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33127121 |
taaatataaaatc-----------------aattgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgat |
33127039 |
T |
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| Q |
306 |
tttagttaatctaagaatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcaga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127038 |
tttagttaatctaagaatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcaga |
33126939 |
T |
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| Q |
406 |
tttaaaagtatcatttaatgnnnnnnnnaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagcttcagttaattataaga |
505 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
33126938 |
tttaaaagtatcatttaatgttttttttaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagtttcaatt-attataaga |
33126840 |
T |
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