View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543-Insertion-8 (Length: 131)
Name: NF0543-Insertion-8
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 5e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 55173353 - 55173232
Alignment:
| Q |
10 |
caggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaaga |
109 |
Q |
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| T |
55173353 |
caggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaaga |
55173254 |
T |
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| Q |
110 |
tattgccttctcagttgcccga |
131 |
Q |
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| T |
55173253 |
tattgccttctcagttgcccga |
55173232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 27721633 - 27721690
Alignment:
| Q |
10 |
caggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagta |
67 |
Q |
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| T |
27721633 |
caggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgctcagta |
27721690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 27721910 - 27721968
Alignment:
| Q |
69 |
agagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgc |
127 |
Q |
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| T |
27721910 |
agagtatttggagatccaccatctcaaagatctgcagaagacattgccttctcagttgc |
27721968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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