View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_high_1 (Length: 855)

Name: NF0543_high_1
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_high_1
NF0543_high_1
[»] chr5 (1 HSPs)
chr5 (8-757)||(4996426-4997175)


Alignment Details
Target: chr5 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 8 - 757
Target Start/End: Complemental strand, 4997175 - 4996426
Alignment:
Q  8 ccaagaatattggtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccataaataccggtttctgtgaggtcgattg 107  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997175 ccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccataaataccggtttctgtgaggtcgattg 4997076  T
Q  108 atacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtc 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997075 atacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtc 4996976  T
Q  208 atcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaacatagtagtgaaaagagaagaatgaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4996975 atcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaacatactagtgaaaagagaagaatgaaa 4996876  T
Q  308 atgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaatgatcatg-ttttttgaaggggtgttaattttgtatttgtatagtt 404  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  4996875 atgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaatgatcgtgtttttttgaaggggtgttaa-tttgtatttgtatagtt 4996777  T
Q  405 gaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcgtgaataagtagaagctcctcttattcatgcatgaagatagagacag 504  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996776 gaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcgtgaataagtagaagctcctcttattcatgcatgaagatagagacag 4996677  T
Q  505 ttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttgnnnnnnnnngggattattatggagaaaagtgtgcaatcaatgatg 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  4996676 ttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttg--attttttgggattattatggagaaaagtgtgcaatcaatgatg 4996579  T
Q  605 aacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgaatacttgaaagcaataagaatt 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  4996578 aacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgattacttgaaatcaataagaatt 4996479  T
Q  705 ttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 757  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996478 ttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 4996426  T

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