View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0543_high_11 (Length: 413)
Name: NF0543_high_11
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 2592730 - 2593044
Alignment:
| Q |
47 |
tcgttcacaaaaagcattttgactcactagtcaacacatgcatgtctaaaacaaatgtacaacctcctagaaattatgctttgcattaatgtttagtggc |
146 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592730 |
tcgtacacaaaaagcattttgactcaccagtcaacacatgcaagtctaaaacaaatgtacaacctcctagaaattatgctttgcattaatgtttagtggc |
2592829 |
T |
|
| Q |
147 |
aaaacctaaacgccgaggagagaagaattgcaggttcgaactcacatcacaatgtatcaaatgatctagcaaccttataaaatctaagccgcacttaaat |
246 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592830 |
aaaacctaaacggcgagaagagaagaattgtaggttcgaacttacatcacaatgtatcaaataatctagcaaccttataaaatctaagccgcacttaaat |
2592929 |
T |
|
| Q |
247 |
gtactttacatttatcaaagttcaagagtagttgttgatgttttgacttcgaactcaaatatcacacgaataaatttagatgtgtggaataaatatcaaa |
346 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2592930 |
gtactttaaatttatcaaagttcaagagtagttgttgatgttttgacttcgaactcaaatatcacacgaataaatttagatgtgtgaaataaatatcaaa |
2593029 |
T |
|
| Q |
347 |
ggcaaccaataacag |
361 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2593030 |
ggcaaccaataacag |
2593044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 2593125 - 2593162
Alignment:
| Q |
376 |
aggtaagagagcagagaaaatgagtaatacaaatatat |
413 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2593125 |
aggtaagagagcagagaaaatgagtgatacaaatatat |
2593162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 32576065 - 32576101
Alignment:
| Q |
295 |
tcgaactcaaatatcacacgaataaatttagatgtgt |
331 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
32576065 |
tcgaactcaaatctcacactaataaatttagatgtgt |
32576101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 13241978 - 13242024
Alignment:
| Q |
298 |
aactcaaatatcacacgaataaatttagatgtgtggaataaatatca |
344 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||| ||||| |
|
|
| T |
13241978 |
aactcaaatatcacactaaaaaacttagatgtgtggaataagtatca |
13242024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 106 times since January 2019
Visitors: 3674