View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_high_18 (Length: 310)
Name: NF0543_high_18
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 29990437 - 29990615
Alignment:
| Q |
131 |
ttcaattggtaaatcacgtcctctagtgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagtgttaaacaacct |
230 |
Q |
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| T |
29990437 |
ttcaattggtaaattacgtcctctaatgtctcaaggttatttaggatctgtcaccagtgagtcttttgattgtactgcttgtcaaagtgctaaacaacct |
29990536 |
T |
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| Q |
231 |
gctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctgtgctcctcctc |
309 |
Q |
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| T |
29990537 |
gctttatcttttcataaatgtacatccatttcagcttcaccgtttgatctagtgcattctgatatttggggtcctcctc |
29990615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 119 - 295
Target Start/End: Original strand, 24431569 - 24431745
Alignment:
| Q |
119 |
tcttgcacatagttcaattggtaaatcacgtcctctagtgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagt |
218 |
Q |
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| T |
24431569 |
tcttgctcatagctctattggaaaattgcgtcctctagtgtttcaaggtcatttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacg |
24431668 |
T |
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| Q |
219 |
gttaaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatat |
295 |
Q |
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| T |
24431669 |
gctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttcaccgtttgatcttgtccactctgatat |
24431745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 295
Target Start/End: Original strand, 16502472 - 16502641
Alignment:
| Q |
126 |
catagttcaattggtaaatcacgtcctctagtgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagtgttaaac |
225 |
Q |
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| T |
16502472 |
cataattcaattggtaagttgcgttctctagtgtctcaaggttatctaggatctgtcgccagtgagtcttttaattgtagtgcttgtgaaacttctaaac |
16502571 |
T |
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| Q |
226 |
aacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatat |
295 |
Q |
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| T |
16502572 |
aaccagccttgtctttcaataaaagtacttccatttcagtttcaccatttgatcttgtgcattctgatat |
16502641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16502324 - 16502436
Alignment:
| Q |
1 |
gcaggatccacgaaccggacaactcataggaactggacgtaagattgaaagactatacgagctcactgaactgcatattcctcatgagtacaacatttgt |
100 |
Q |
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| T |
16502324 |
gcaggatccacgaaccagacaactcatagggacttggcgtaagatcgggaggttatatgagctcactgaactgcatattcctcatgagttaaacatttgt |
16502423 |
T |
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| Q |
101 |
gctgctaccacac |
113 |
Q |
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|| ||| |||||| |
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| T |
16502424 |
gcagcttccacac |
16502436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 53017742 - 53017572
Alignment:
| Q |
125 |
acatagttcaattggtaaatcacgtcctctagtgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagtgttaaa |
224 |
Q |
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|||||||||||||||||| | ||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||| || |||| |
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| T |
53017742 |
acatagttcaattggtaagttgcgtcctctagtgtctcgaggttatttaggatatgtcgccaatgagtcttttgattgtactgcttgttaaattgctaaa |
53017643 |
T |
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| Q |
225 |
caacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatat |
295 |
Q |
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| T |
53017642 |
caactagtcttgtctttcgattaaagtacttccatttcagtttcaccatttgatatagtgcattctaatat |
53017572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 53017888 - 53017777
Alignment:
| Q |
1 |
gcaggatccacgaaccggacaactcataggaactggacgtaagattgaaagactatacgagctcactgaactgcatattcctcatgagtacaacatttgt |
100 |
Q |
| |
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|||||||||||| |||| |||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53017888 |
gcaggatccacggaccg-acaactcatagggactgggcgtaagatcagaaggttatatgagctcactgaactgcatattcctcatgagtcaaacatttgt |
53017790 |
T |
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| Q |
101 |
gctgctaccacac |
113 |
Q |
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| T |
53017789 |
gcagcttccacac |
53017777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 295
Target Start/End: Original strand, 17450618 - 17450794
Alignment:
| Q |
119 |
tcttgcacatagttcaattggtaaatcacgtcctctagtgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagt |
218 |
Q |
| |
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|||||| ||||| || ||||| |||| ||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||| ||| ||| |
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| T |
17450618 |
tcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtcatttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacg |
17450717 |
T |
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| Q |
219 |
gttaaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatat |
295 |
Q |
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| T |
17450718 |
gctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttcaccgtttgatcttgtccactctgatat |
17450794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 14825383 - 14825464
Alignment:
| Q |
157 |
tgtctaaaggttatttaggatctgtcactaatgagtcttttgattgtactgcatgttaaagtgttaaacaacctgctttatc |
238 |
Q |
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||||| ||||| ||||||||||||| || |||||||||||| |||||||| | ||| ||| | ||||||||| |||||||| |
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| T |
14825383 |
tgtctcaaggtcatttaggatctgttacaaatgagtcttttaattgtactccttgtcaaactactaaacaaccagctttatc |
14825464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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