View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_high_2 (Length: 854)

Name: NF0543_high_2
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_high_2
NF0543_high_2
[»] chr5 (1 HSPs)
chr5 (8-756)||(4996426-4997175)


Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 8 - 756
Target Start/End: Complemental strand, 4997175 - 4996426
Alignment:
Q  8 ccaagaatattggtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaca-tcatcataaataccggtttctgtgaggtcgattg 106  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  4997175 ccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccataaataccggtttctgtgaggtcgattg 4997076  T
Q  107 atacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtc 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997075 atacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtc 4996976  T
Q  207 atcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaacatagtagtgaaaagagaagaatgaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4996975 atcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaacatactagtgaaaagagaagaatgaaa 4996876  T
Q  307 atgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaatgatcatg-ttttttgaaggggtgttaattttgtatttgtatagtt 403  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  4996875 atgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaatgatcgtgtttttttgaaggggtgttaa-tttgtatttgtatagtt 4996777  T
Q  404 gaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcgtgaataagtagaagctcctcttattcatgcatgaagatagagacag 503  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996776 gaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcgtgaataagtagaagctcctcttattcatgcatgaagatagagacag 4996677  T
Q  504 ttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttgnnnnnnnnngggattattatggagaaaagtgtgcaatcaatgatg 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  4996676 ttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttg--attttttgggattattatggagaaaagtgtgcaatcaatgatg 4996579  T
Q  604 aacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgaatacttgaaagcaataagaatt 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  4996578 aacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgattacttgaaatcaataagaatt 4996479  T
Q  704 ttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 756  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996478 ttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 4996426  T

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