View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_high_20 (Length: 298)
Name: NF0543_high_20
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 20025519 - 20025233
Alignment:
| Q |
1 |
catggccgatgcagttgctggtgccgaaaagaagtattcagatggaagccttgcaacttccattgttagggaaattggaaggactaacccaaaagattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20025519 |
catggccgatgcagttgctggtgccgaaaagaagtattcagatggaagccttgcaacttccattgttagggaaattggaaggactaacccaaaagattat |
20025420 |
T |
|
| Q |
101 |
gtcaaagacactattggtgctgaaaatgtggggcgttttcttgtggagttagctgaccgtattccaaaattgatatcaactaacattggcattcttgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20025419 |
gtcaaagacactattggtgctgaaaatgtggggcgttttcttgtggagttagctgaccgtattccaaaattgatatcaactaacattggcattcttgttc |
20025320 |
T |
|
| Q |
201 |
ctcactttggtggagagtcttataagattaggaatgctcttgtagctgtgctgggtaagctagtatcaaaagcgtttaaggatattg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20025319 |
ctcactttggtggagagtcttataagattaggaatgctcttgtagctgtgctgggtaagctagtatcaaaagcgtttaaggatattg |
20025233 |
T |
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